Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:133151125..133151898-chr6:133283825..133285077,5	MCF-7	breast:
2	chr6:133151095..133151913-chr6:133282483..133283322,2	MCF-7	breast:
3	chr6:133151116..133151935-chr6:133874509..133875482,3	MCF-7	breast:
4	chr6:133151099..133152076-chr6:133282420..133283410,5	MCF-7	breast:
5	chr6:133151304..133151920-chr6:133833595..133834151,2	MCF-7	breast:
6	chr6:133150152..133152401-chr6:133214566..133217408,2	MCF-7	breast:
7	chr6:133151552..133152231-chr6:133505787..133506589,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1824361	1.00[AMR][1000 genomes]
rs2327284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35121891	1.00[EUR][1000 genomes]
rs4569990	1.00[AMR][1000 genomes]
rs56786581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56830698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57172226	1.00[EUR][1000 genomes]
rs57212631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57903874	1.00[EUR][1000 genomes]
rs58644652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58940825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58994969	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59585087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59597300	1.00[EUR][1000 genomes]
rs60264875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61033120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61244629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61292521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73554467	1.00[EUR][1000 genomes]
rs73558395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv886676	chr6:133111706-133168582	Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	esv1806734	chr6:133125643-133168582	Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133140800-133153800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:133141400-133151800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:133151600-133152000	Enhancers	Brain Cingulate Gyrus	brain

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