Variant report

Variant	nsv970141
Chromosome Location	chr6:71875418-71878777
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OGFRL1-9	chr6:71874779-71875473	NONHSAT113463

Extended variants
information (count: 43 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs555622715	chr6:71875466-71875467	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs573858787	chr6:71875467-71875468	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs141766129	chr6:71877610-71877611	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs568930072	chr6:71877623-71877624	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs563140375	chr6:71877670-71877671	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs575231547	chr6:71877671-71877672	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs147096504	chr6:71877688-71877689	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs542237229	chr6:71877691-71877692	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs560973502	chr6:71877724-71877725	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs536254216	chr6:71877754-71877755	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs148133652	chr6:71877758-71877759	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs540367172	chr6:71877812-71877813	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs578025873	chr6:71877852-71877853	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs9360439	chr6:71877908-71877909	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs189992103	chr6:71877918-71877919	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs544117385	chr6:71877945-71877946	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs550378720	chr6:71877972-71877973	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs9446348	chr6:71877980-71877981	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs530034174	chr6:71877991-71877992	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs548276101	chr6:71878047-71878048	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs572784540	chr6:71878052-71878053	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs566898859	chr6:71878072-71878073	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs192736260	chr6:71878097-71878098	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs373816685	chr6:71878113-71878114	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs116645999	chr6:71878186-71878187	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs142031542	chr6:71878187-71878188	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs538412040	chr6:71878219-71878220	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs183684765	chr6:71878286-71878287	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs575016394	chr6:71878311-71878312	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs543635296	chr6:71878412-71878413	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs529428955	chr6:71878420-71878421	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs540600370	chr6:71878443-71878444	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs367579574	chr6:71878497-71878498	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs561110949	chr6:71878498-71878499	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs542547652	chr6:71878533-71878534	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs9455367	chr6:71878609-71878610	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs9346438	chr6:71878647-71878648	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs539855039	chr6:71878660-71878661	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs9354973	chr6:71878689-71878690	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs9364135	chr6:71878709-71878710	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs562645835	chr6:71878716-71878717	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs188300330	chr6:71878717-71878718	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs137910506	chr6:71878723-71878724	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ovarian cancer	17437010	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Multiple myeloma	16616336	CNVD
Acute myeloid leukemia	16864856	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71877600-71878000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:71877600-71878200	Enhancers	Fetal Lung	lung
3	chr6:71877800-71880000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:71878000-71878400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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