Variant report

Variant	rs9354973
Chromosome Location	chr6:71878689-71878690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12055851	0.96[EUR][1000 genomes]
rs1207166	0.90[EUR][1000 genomes]
rs12192262	0.90[EUR][1000 genomes]
rs12199407	0.83[AMR][1000 genomes]
rs12204260	0.94[EUR][1000 genomes]
rs12204302	0.90[EUR][1000 genomes]
rs12205953	0.94[EUR][1000 genomes]
rs12206074	0.98[EUR][1000 genomes]
rs12212899	0.98[EUR][1000 genomes]
rs1418684	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1418687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1418688	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1418689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1539427	0.96[EUR][1000 genomes]
rs1592227	0.98[EUR][1000 genomes]
rs16880961	0.98[EUR][1000 genomes]
rs16880971	0.98[EUR][1000 genomes]
rs1739809	0.98[EUR][1000 genomes]
rs1857220	0.98[EUR][1000 genomes]
rs1891531	1.00[CEU][hapmap]
rs1935794	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1935800	0.98[EUR][1000 genomes]
rs1935801	0.98[EUR][1000 genomes]
rs1935802	0.98[EUR][1000 genomes]
rs1935803	0.98[EUR][1000 genomes]
rs2211422	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2347921	0.96[EUR][1000 genomes]
rs2881765	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4707896	0.98[EUR][1000 genomes]
rs4707899	0.94[EUR][1000 genomes]
rs57285758	0.98[EUR][1000 genomes]
rs60133694	0.98[EUR][1000 genomes]
rs6902964	0.98[EUR][1000 genomes]
rs6915587	0.98[EUR][1000 genomes]
rs6923289	0.98[EUR][1000 genomes]
rs6931616	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6934897	0.96[EUR][1000 genomes]
rs6937381	0.96[EUR][1000 genomes]
rs6940058	0.98[EUR][1000 genomes]
rs73498984	0.98[EUR][1000 genomes]
rs73501162	0.98[EUR][1000 genomes]
rs7743157	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9360440	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9446338	0.90[EUR][1000 genomes]
rs9446339	0.90[EUR][1000 genomes]
rs9455356	0.98[EUR][1000 genomes]
rs9455379	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527265	chr6:71867477-71902656	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv970141	chr6:71875418-71878777	Active TSS Enhancers	lncRNA	n/a	inside rSNPs	n/a
3	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71877800-71880000	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links