Variant report

Variant	rs2881765
Chromosome Location	chr6:71865501-71865502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12055851	0.98[EUR][1000 genomes]
rs1207165	0.81[EUR][1000 genomes]
rs1207166	0.92[EUR][1000 genomes]
rs1212603	0.81[EUR][1000 genomes]
rs12192262	0.92[EUR][1000 genomes]
rs12199407	0.83[AMR][1000 genomes]
rs12204260	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12204302	0.92[EUR][1000 genomes]
rs12205953	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12206074	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12212899	1.00[EUR][1000 genomes]
rs1418684	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1418687	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1418688	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1418689	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1539427	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1592227	1.00[EUR][1000 genomes]
rs16880961	1.00[EUR][1000 genomes]
rs16880971	1.00[EUR][1000 genomes]
rs1739809	1.00[EUR][1000 genomes]
rs1857220	1.00[EUR][1000 genomes]
rs1891531	1.00[CEU][hapmap]
rs1935794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1935800	1.00[EUR][1000 genomes]
rs1935801	1.00[EUR][1000 genomes]
rs1935802	1.00[EUR][1000 genomes]
rs1935803	1.00[EUR][1000 genomes]
rs2211422	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2347921	0.98[EUR][1000 genomes]
rs4707896	1.00[EUR][1000 genomes]
rs4707899	0.96[EUR][1000 genomes]
rs57285758	1.00[EUR][1000 genomes]
rs60133694	1.00[EUR][1000 genomes]
rs6902964	1.00[EUR][1000 genomes]
rs6915587	1.00[EUR][1000 genomes]
rs6923289	1.00[EUR][1000 genomes]
rs6931616	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934897	0.98[EUR][1000 genomes]
rs6937381	0.98[EUR][1000 genomes]
rs6940058	1.00[EUR][1000 genomes]
rs73498984	1.00[EUR][1000 genomes]
rs73501162	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7743157	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9354973	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9360440	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9446338	0.92[EUR][1000 genomes]
rs9446339	0.92[EUR][1000 genomes]
rs9455356	1.00[EUR][1000 genomes]
rs9455379	0.83[AMR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71862000-71868000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:71864000-71867000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:71864000-71867000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:71864000-71867400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:71864400-71866200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:71864600-71866600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:71864600-71866800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:71864600-71866800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:71864600-71867000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:71864800-71866400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:71864800-71866600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:71864800-71866800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:71865400-71865600	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links