Variant report

Variant	rs1935794
Chromosome Location	chr6:71874827-71874828
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OGFRL1-9	chr6:71874779-71875473	NONHSAT113463

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12055851	0.98[EUR][1000 genomes]
rs1207165	0.81[EUR][1000 genomes]
rs1207166	0.92[EUR][1000 genomes]
rs1212603	0.81[EUR][1000 genomes]
rs12192262	0.92[EUR][1000 genomes]
rs12199407	0.83[AMR][1000 genomes]
rs12204260	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12204302	0.92[EUR][1000 genomes]
rs12205953	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12206074	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12212899	1.00[EUR][1000 genomes]
rs1418684	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1418687	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1418688	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1418689	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1539427	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1592227	1.00[EUR][1000 genomes]
rs16880961	1.00[EUR][1000 genomes]
rs16880971	1.00[EUR][1000 genomes]
rs1739809	1.00[EUR][1000 genomes]
rs1857220	1.00[EUR][1000 genomes]
rs1935800	1.00[EUR][1000 genomes]
rs1935801	1.00[EUR][1000 genomes]
rs1935802	1.00[EUR][1000 genomes]
rs1935803	1.00[EUR][1000 genomes]
rs2211422	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2347921	0.98[EUR][1000 genomes]
rs2881765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4707896	1.00[EUR][1000 genomes]
rs4707899	0.96[EUR][1000 genomes]
rs57285758	1.00[EUR][1000 genomes]
rs60133694	1.00[EUR][1000 genomes]
rs6902964	1.00[EUR][1000 genomes]
rs6915587	1.00[EUR][1000 genomes]
rs6923289	1.00[EUR][1000 genomes]
rs6931616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934897	0.98[EUR][1000 genomes]
rs6937381	0.98[EUR][1000 genomes]
rs6940058	1.00[EUR][1000 genomes]
rs73498984	1.00[EUR][1000 genomes]
rs73501162	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7743157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9354973	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9360440	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9446338	0.92[EUR][1000 genomes]
rs9446339	0.92[EUR][1000 genomes]
rs9455356	1.00[EUR][1000 genomes]
rs9455379	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527265	chr6:71867477-71902656	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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