Variant report

Variant	rs12205953
Chromosome Location	chr6:71887829-71887830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12055851	0.90[EUR][1000 genomes]
rs1207166	0.85[EUR][1000 genomes]
rs12192262	0.85[EUR][1000 genomes]
rs12199407	0.80[EUR][1000 genomes]
rs12204260	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12204302	0.85[EUR][1000 genomes]
rs12206074	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12212899	0.92[EUR][1000 genomes]
rs1418684	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1418687	0.94[EUR][1000 genomes]
rs1418688	0.94[EUR][1000 genomes]
rs1418689	0.94[EUR][1000 genomes]
rs1539427	0.90[EUR][1000 genomes]
rs1592227	0.92[EUR][1000 genomes]
rs16880961	0.92[EUR][1000 genomes]
rs16880971	0.92[EUR][1000 genomes]
rs1739809	0.92[EUR][1000 genomes]
rs1857220	0.92[EUR][1000 genomes]
rs1935794	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1935800	0.92[EUR][1000 genomes]
rs1935801	0.92[EUR][1000 genomes]
rs1935802	0.92[EUR][1000 genomes]
rs1935803	0.92[EUR][1000 genomes]
rs2211422	0.94[EUR][1000 genomes]
rs2347921	0.90[EUR][1000 genomes]
rs2881765	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4707896	0.92[EUR][1000 genomes]
rs4707899	0.89[EUR][1000 genomes]
rs57285758	0.92[EUR][1000 genomes]
rs60133694	0.92[EUR][1000 genomes]
rs6902964	0.92[EUR][1000 genomes]
rs6915587	0.92[EUR][1000 genomes]
rs6923289	0.92[EUR][1000 genomes]
rs6931616	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6934897	0.90[EUR][1000 genomes]
rs6937381	0.90[EUR][1000 genomes]
rs6940058	0.92[EUR][1000 genomes]
rs73498984	0.92[EUR][1000 genomes]
rs73501162	0.92[EUR][1000 genomes]
rs7743157	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9354973	0.94[EUR][1000 genomes]
rs9360440	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446338	0.85[EUR][1000 genomes]
rs9446339	0.85[EUR][1000 genomes]
rs9455356	0.92[EUR][1000 genomes]
rs9455379	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527265	chr6:71867477-71902656	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71887200-71891200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:71887400-71892000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:71887600-71889200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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