Variant report

Variant	rs4707899
Chromosome Location	chr6:71869245-71869246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10806642	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10806645	0.84[AFR][1000 genomes]
rs10806646	0.86[AFR][1000 genomes]
rs10945289	0.85[AMR][1000 genomes]
rs10945291	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12055374	0.81[AFR][1000 genomes]
rs12055466	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12055851	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12055852	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1207166	0.89[EUR][1000 genomes]
rs12192262	0.89[EUR][1000 genomes]
rs12204260	0.89[EUR][1000 genomes]
rs12204302	0.89[EUR][1000 genomes]
rs12205953	0.89[EUR][1000 genomes]
rs12206074	0.96[EUR][1000 genomes]
rs12212899	0.96[EUR][1000 genomes]
rs1418679	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1418680	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1418681	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1418684	0.96[EUR][1000 genomes]
rs1418687	0.94[EUR][1000 genomes]
rs1418688	0.94[EUR][1000 genomes]
rs1418689	0.94[EUR][1000 genomes]
rs1539424	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1539425	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1539426	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1539427	0.98[EUR][1000 genomes]
rs1592227	0.96[EUR][1000 genomes]
rs16880961	0.96[EUR][1000 genomes]
rs16880971	0.96[EUR][1000 genomes]
rs1739805	0.82[AFR][1000 genomes]
rs1739809	0.96[EUR][1000 genomes]
rs1857220	0.96[EUR][1000 genomes]
rs1891531	0.87[CEU][hapmap]
rs1935794	0.96[EUR][1000 genomes]
rs1935797	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1935798	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1935799	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1935800	0.96[EUR][1000 genomes]
rs1935801	0.96[EUR][1000 genomes]
rs1935802	0.96[EUR][1000 genomes]
rs1935803	0.96[EUR][1000 genomes]
rs2153912	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2211422	0.94[EUR][1000 genomes]
rs2347921	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2347922	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2881765	0.96[EUR][1000 genomes]
rs4707896	0.96[EUR][1000 genomes]
rs4707897	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4707898	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57285758	0.96[EUR][1000 genomes]
rs60133694	0.96[EUR][1000 genomes]
rs6455408	0.82[AFR][1000 genomes]
rs6455409	0.82[AFR][1000 genomes]
rs6899313	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6899520	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6902964	0.96[EUR][1000 genomes]
rs6914378	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6915587	0.96[EUR][1000 genomes]
rs6923289	0.96[EUR][1000 genomes]
rs6931616	0.96[EUR][1000 genomes]
rs6934897	0.98[EUR][1000 genomes]
rs6937195	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6937381	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6940058	0.96[EUR][1000 genomes]
rs6941623	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73498984	0.96[EUR][1000 genomes]
rs73501162	0.96[EUR][1000 genomes]
rs7743157	0.86[CEU][hapmap];0.96[EUR][1000 genomes]
rs9342811	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9342813	0.85[AMR][1000 genomes]
rs9342814	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9346438	0.81[AMR][1000 genomes]
rs9351802	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9354973	0.94[EUR][1000 genomes]
rs9360439	0.81[AMR][1000 genomes]
rs9360440	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs9446338	0.89[EUR][1000 genomes]
rs9446339	0.89[EUR][1000 genomes]
rs9455356	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527265	chr6:71867477-71902656	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71866400-71869800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:71866600-71869800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:71866800-71870000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:71867200-71869800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:71868000-71869400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:71868400-71869400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:71868400-71869400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:71868600-71869400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:71868800-71869600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr6:71869200-71869600	Enhancers	H1 Cell Line	embryonic stem cell

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