Variant report

Variant	rs12206074
Chromosome Location	chr6:71861955-71861956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12055851	0.98[EUR][1000 genomes]
rs1207165	0.81[EUR][1000 genomes]
rs1207166	0.92[EUR][1000 genomes]
rs1212603	0.81[EUR][1000 genomes]
rs12192262	0.92[EUR][1000 genomes]
rs12204260	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12204302	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12205953	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12212899	1.00[EUR][1000 genomes]
rs1418684	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1418687	0.98[EUR][1000 genomes]
rs1418688	0.98[EUR][1000 genomes]
rs1418689	0.98[EUR][1000 genomes]
rs1539427	0.98[EUR][1000 genomes]
rs1592227	1.00[EUR][1000 genomes]
rs16880961	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16880971	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1739809	1.00[EUR][1000 genomes]
rs1857220	1.00[EUR][1000 genomes]
rs1891531	1.00[CEU][hapmap]
rs1935794	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1935800	1.00[EUR][1000 genomes]
rs1935801	1.00[EUR][1000 genomes]
rs1935802	1.00[EUR][1000 genomes]
rs1935803	1.00[EUR][1000 genomes]
rs2211422	0.98[EUR][1000 genomes]
rs2347921	0.98[EUR][1000 genomes]
rs2881765	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4707896	1.00[EUR][1000 genomes]
rs4707899	0.96[EUR][1000 genomes]
rs57285758	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60133694	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6902964	1.00[EUR][1000 genomes]
rs6915587	1.00[EUR][1000 genomes]
rs6923289	1.00[EUR][1000 genomes]
rs6931616	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934897	0.98[EUR][1000 genomes]
rs6937381	0.98[EUR][1000 genomes]
rs6940058	1.00[EUR][1000 genomes]
rs73498984	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73501162	1.00[EUR][1000 genomes]
rs7743157	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9354973	0.98[EUR][1000 genomes]
rs9360440	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9446338	0.92[EUR][1000 genomes]
rs9446339	0.92[EUR][1000 genomes]
rs9455356	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv17967	chr6:71860706-71862638	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71856400-71863600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:71861600-71862000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:71861600-71862000	Enhancers	Brain Anterior Caudate	brain
4	chr6:71861800-71862000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:71861800-71862000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:71861800-71862000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:71861800-71862000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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