Variant report

Variant	rs1418684
Chromosome Location	chr6:71867477-71867478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12055851	0.98[EUR][1000 genomes]
rs1207165	0.81[EUR][1000 genomes]
rs1207166	0.92[EUR][1000 genomes]
rs1212603	0.81[EUR][1000 genomes]
rs12192262	0.92[EUR][1000 genomes]
rs12199407	0.83[AMR][1000 genomes]
rs12204260	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12204302	0.92[EUR][1000 genomes]
rs12205953	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12206074	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12212899	1.00[EUR][1000 genomes]
rs1418687	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1418688	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1418689	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1539427	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1592227	1.00[EUR][1000 genomes]
rs16880961	1.00[EUR][1000 genomes]
rs16880971	1.00[EUR][1000 genomes]
rs1739809	1.00[EUR][1000 genomes]
rs1857220	1.00[EUR][1000 genomes]
rs1891531	1.00[CEU][hapmap]
rs1935794	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1935800	1.00[EUR][1000 genomes]
rs1935801	1.00[EUR][1000 genomes]
rs1935802	1.00[EUR][1000 genomes]
rs1935803	1.00[EUR][1000 genomes]
rs2211422	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2347921	0.98[EUR][1000 genomes]
rs2881765	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4707896	1.00[EUR][1000 genomes]
rs4707899	0.96[EUR][1000 genomes]
rs57285758	1.00[EUR][1000 genomes]
rs60133694	1.00[EUR][1000 genomes]
rs6902964	1.00[EUR][1000 genomes]
rs6915587	1.00[EUR][1000 genomes]
rs6923289	1.00[EUR][1000 genomes]
rs6931616	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934897	0.98[EUR][1000 genomes]
rs6937381	0.98[EUR][1000 genomes]
rs6940058	1.00[EUR][1000 genomes]
rs73498984	1.00[EUR][1000 genomes]
rs73501162	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7743157	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9354973	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9360440	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9446338	0.92[EUR][1000 genomes]
rs9446339	0.92[EUR][1000 genomes]
rs9455356	1.00[EUR][1000 genomes]
rs9455379	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527265	chr6:71867477-71902656	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71862000-71868000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:71866400-71869800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:71866600-71868400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:71866600-71869800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:71866800-71867600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:71866800-71868400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:71866800-71868400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:71866800-71870000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:71867000-71867600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:71867000-71867600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:71867000-71867800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:71867000-71868600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:71867200-71869800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:71867400-71868600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr6:71867400-71868800	Weak transcription	H9 Cell Line	embryonic stem cell

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