Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10080816	0.84[AFR][1000 genomes]
rs12199407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12204260	0.80[EUR][1000 genomes]
rs12205953	0.80[EUR][1000 genomes]
rs1418684	0.83[AMR][1000 genomes]
rs1418687	0.83[AMR][1000 genomes]
rs1418688	0.83[AMR][1000 genomes]
rs1418689	0.83[AMR][1000 genomes]
rs1891531	0.87[CEU][hapmap]
rs1935794	0.83[AMR][1000 genomes]
rs2211422	0.83[AMR][1000 genomes]
rs2881765	0.83[AMR][1000 genomes]
rs4129742	0.84[EUR][1000 genomes]
rs6920871	0.81[EUR][1000 genomes]
rs6931616	0.83[AMR][1000 genomes]
rs7743157	0.87[CEU][hapmap];0.87[GIH][hapmap];0.83[AMR][1000 genomes]
rs9354973	0.83[AMR][1000 genomes]
rs9360440	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9360442	0.84[EUR][1000 genomes]
rs9364142	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886150	chr6:71888871-71936292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71908000-71915200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:71908000-71915400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:71912600-71915200	Weak transcription	Fetal Kidney	kidney
4	chr6:71913000-71915200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:71914200-71915000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:71914400-71915600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:71914400-71915800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:71914400-71916200	Enhancers	Osteobl	bone
9	chr6:71914400-71916600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:71914600-71915400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:71914600-71915600	Enhancers	HMEC	breast
12	chr6:71914600-71916000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:71914800-71915200	Enhancers	HSMMtube	muscle
14	chr6:71914800-71915600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:71914800-71915800	Enhancers	NHDF-Ad	bronchial
16	chr6:71914800-71916400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:71914800-71916600	Enhancers	HSMM	muscle

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