Variant report

Variant	rs57285758
Chromosome Location	chr6:71837030-71837031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr6:71836990-71837198	SH-SY5Y	brain:	n/a	n/a
2	SETDB1	chr6:71836766-71837594	U2OS	brain:	n/a	n/a
3	KAP1	chr6:71836850-71837666	HEK293	kidney:	n/a	n/a
4	POLR2A	chr6:71836956-71837111	MCF10A-Er-Src	breast:	n/a	n/a
5	KAP1	chr6:71836785-71837631	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000221345	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12055851	0.98[EUR][1000 genomes]
rs1207165	0.81[EUR][1000 genomes]
rs1207166	0.92[EUR][1000 genomes]
rs1212603	0.81[EUR][1000 genomes]
rs12192262	0.92[EUR][1000 genomes]
rs12204260	0.92[EUR][1000 genomes]
rs12204302	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12205953	0.92[EUR][1000 genomes]
rs12206074	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12212899	1.00[EUR][1000 genomes]
rs1418684	1.00[EUR][1000 genomes]
rs1418687	0.98[EUR][1000 genomes]
rs1418688	0.98[EUR][1000 genomes]
rs1418689	0.98[EUR][1000 genomes]
rs1539427	0.98[EUR][1000 genomes]
rs1592227	1.00[EUR][1000 genomes]
rs16880961	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16880971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1739809	1.00[EUR][1000 genomes]
rs1857220	1.00[EUR][1000 genomes]
rs1935794	1.00[EUR][1000 genomes]
rs1935800	1.00[EUR][1000 genomes]
rs1935801	1.00[EUR][1000 genomes]
rs1935802	1.00[EUR][1000 genomes]
rs1935803	1.00[EUR][1000 genomes]
rs2211422	0.98[EUR][1000 genomes]
rs2347921	0.98[EUR][1000 genomes]
rs2881765	1.00[EUR][1000 genomes]
rs4707896	1.00[EUR][1000 genomes]
rs4707899	0.96[EUR][1000 genomes]
rs60133694	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6902964	1.00[EUR][1000 genomes]
rs6915587	1.00[EUR][1000 genomes]
rs6923289	1.00[EUR][1000 genomes]
rs6931616	1.00[EUR][1000 genomes]
rs6934897	0.98[EUR][1000 genomes]
rs6937381	0.98[EUR][1000 genomes]
rs6940058	1.00[EUR][1000 genomes]
rs73498984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501162	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7743157	1.00[EUR][1000 genomes]
rs9354973	0.98[EUR][1000 genomes]
rs9360440	0.92[EUR][1000 genomes]
rs9446338	0.92[EUR][1000 genomes]
rs9446339	0.92[EUR][1000 genomes]
rs9455356	1.00[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71834600-71848800	Weak transcription	NH-A	brain
2	chr6:71837000-71837600	Enhancers	Primary neutrophils fromperipheralblood	blood

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