Variant report

Variant	rs1539427
Chromosome Location	chr6:71864014-71864015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12055851	1.00[EUR][1000 genomes]
rs1207166	0.91[EUR][1000 genomes]
rs12192262	0.91[EUR][1000 genomes]
rs12204260	0.90[EUR][1000 genomes]
rs12204302	0.91[EUR][1000 genomes]
rs12205953	0.90[EUR][1000 genomes]
rs12206074	0.98[EUR][1000 genomes]
rs12212899	0.98[EUR][1000 genomes]
rs1418684	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1418687	0.96[EUR][1000 genomes]
rs1418688	0.96[EUR][1000 genomes]
rs1418689	0.96[EUR][1000 genomes]
rs1592227	0.98[EUR][1000 genomes]
rs16880961	0.98[EUR][1000 genomes]
rs16880971	0.98[EUR][1000 genomes]
rs1739809	0.98[EUR][1000 genomes]
rs1857220	0.98[EUR][1000 genomes]
rs1891531	0.87[CEU][hapmap]
rs1935794	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1935800	0.98[EUR][1000 genomes]
rs1935801	0.98[EUR][1000 genomes]
rs1935802	0.98[EUR][1000 genomes]
rs1935803	0.98[EUR][1000 genomes]
rs2211422	0.96[EUR][1000 genomes]
rs2347921	1.00[EUR][1000 genomes]
rs2881765	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4707896	0.98[EUR][1000 genomes]
rs4707899	0.98[EUR][1000 genomes]
rs57285758	0.98[EUR][1000 genomes]
rs60133694	0.98[EUR][1000 genomes]
rs6902964	0.98[EUR][1000 genomes]
rs6915587	0.98[EUR][1000 genomes]
rs6923289	0.98[EUR][1000 genomes]
rs6931616	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6934897	1.00[EUR][1000 genomes]
rs6937381	1.00[EUR][1000 genomes]
rs6940058	0.98[EUR][1000 genomes]
rs73498984	0.98[EUR][1000 genomes]
rs73501162	0.98[EUR][1000 genomes]
rs7743157	0.87[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9354973	0.96[EUR][1000 genomes]
rs9360440	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9446338	0.91[EUR][1000 genomes]
rs9446339	0.91[EUR][1000 genomes]
rs9455356	0.98[EUR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71862000-71868000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:71863400-71864200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:71863400-71864400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:71863400-71864800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:71863400-71865000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:71863600-71864200	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:71863600-71864200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:71863600-71864400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:71863600-71864600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:71863600-71864600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:71863600-71864600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:71863600-71864600	Enhancers	Brain Germinal Matrix	brain
13	chr6:71863600-71864800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:71863600-71864800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:71863600-71864800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:71863800-71864600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:71864000-71864400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:71864000-71867000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:71864000-71867000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:71864000-71867400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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