Variant report

Variant	rs2347922
Chromosome Location	chr6:71864299-71864300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1013408	1.00[ASN][1000 genomes]
rs10806642	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10806645	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10806646	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10945283	0.91[YRI][hapmap]
rs10945284	0.96[YRI][hapmap]
rs10945289	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10945291	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10945293	1.00[ASN][1000 genomes]
rs11967291	1.00[ASN][1000 genomes]
rs12055374	0.92[AFR][1000 genomes]
rs12055466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12055851	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12055852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1207168	0.92[YRI][hapmap]
rs1207170	0.91[YRI][hapmap]
rs1207171	0.92[YRI][hapmap]
rs12110395	1.00[ASN][1000 genomes]
rs12205990	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418679	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418680	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418681	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418683	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539424	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539425	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539426	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1739801	1.00[ASN][1000 genomes]
rs1739805	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1739808	1.00[ASN][1000 genomes]
rs1775547	0.92[YRI][hapmap]
rs1775549	1.00[ASN][1000 genomes]
rs1832948	1.00[ASN][1000 genomes]
rs1832949	1.00[ASN][1000 genomes]
rs1857218	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935792	1.00[ASN][1000 genomes]
rs1935793	1.00[ASN][1000 genomes]
rs1935796	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935797	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935798	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935799	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096216	1.00[ASN][1000 genomes]
rs2096217	1.00[ASN][1000 genomes]
rs2153912	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2207677	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348138	0.81[EUR][1000 genomes]
rs4434432	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707897	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707898	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707899	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57458638	1.00[ASN][1000 genomes]
rs58391752	1.00[ASN][1000 genomes]
rs60360675	1.00[ASN][1000 genomes]
rs61020445	1.00[ASN][1000 genomes]
rs6455408	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455409	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937381	0.80[AMR][1000 genomes]
rs6941623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72926558	1.00[ASN][1000 genomes]
rs73502802	1.00[ASN][1000 genomes]
rs73746998	1.00[ASN][1000 genomes]
rs73747002	1.00[ASN][1000 genomes]
rs7739792	1.00[ASN][1000 genomes]
rs9342811	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9342813	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9342814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9346438	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351802	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9354961	1.00[ASN][1000 genomes]
rs9360439	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9364135	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446350	1.00[ASN][1000 genomes]
rs9446351	1.00[ASN][1000 genomes]
rs9455335	1.00[ASN][1000 genomes]
rs9455336	1.00[ASN][1000 genomes]
rs9455364	1.00[ASN][1000 genomes]
rs9455370	1.00[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71862000-71868000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:71863400-71864400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:71863400-71864800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:71863400-71865000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:71863600-71864400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:71863600-71864600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:71863600-71864600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:71863600-71864600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:71863600-71864600	Enhancers	Brain Germinal Matrix	brain
10	chr6:71863600-71864800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:71863600-71864800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:71863600-71864800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:71863800-71864600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:71864000-71864400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:71864000-71867000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr6:71864000-71867000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:71864000-71867400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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