Variant report

Variant	rs60360675
Chromosome Location	chr6:71893706-71893707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71892402..71894327-chr6:71895925..71898197,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1013408	1.00[ASN][1000 genomes]
rs10806642	1.00[ASN][1000 genomes]
rs10806645	1.00[ASN][1000 genomes]
rs10806646	1.00[ASN][1000 genomes]
rs10945289	1.00[ASN][1000 genomes]
rs10945293	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967291	1.00[ASN][1000 genomes]
rs12055466	1.00[ASN][1000 genomes]
rs12055852	1.00[ASN][1000 genomes]
rs12110395	1.00[ASN][1000 genomes]
rs12205990	1.00[ASN][1000 genomes]
rs1418679	1.00[ASN][1000 genomes]
rs1418680	1.00[ASN][1000 genomes]
rs1418681	1.00[ASN][1000 genomes]
rs1418683	1.00[ASN][1000 genomes]
rs1539424	1.00[ASN][1000 genomes]
rs1539425	1.00[ASN][1000 genomes]
rs1539426	1.00[ASN][1000 genomes]
rs1739801	1.00[ASN][1000 genomes]
rs1739805	1.00[ASN][1000 genomes]
rs1739808	1.00[ASN][1000 genomes]
rs1775549	1.00[ASN][1000 genomes]
rs1832948	1.00[ASN][1000 genomes]
rs1832949	1.00[ASN][1000 genomes]
rs1857218	1.00[ASN][1000 genomes]
rs1935792	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935793	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935796	1.00[ASN][1000 genomes]
rs1935797	1.00[ASN][1000 genomes]
rs1935798	1.00[ASN][1000 genomes]
rs1935799	1.00[ASN][1000 genomes]
rs2096216	1.00[ASN][1000 genomes]
rs2096217	1.00[ASN][1000 genomes]
rs2153912	1.00[ASN][1000 genomes]
rs2207677	1.00[ASN][1000 genomes]
rs2347922	1.00[ASN][1000 genomes]
rs4434432	1.00[ASN][1000 genomes]
rs4707897	1.00[ASN][1000 genomes]
rs4707898	1.00[ASN][1000 genomes]
rs57458638	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58391752	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58929625	0.89[AFR][1000 genomes]
rs60044577	0.89[AFR][1000 genomes]
rs61020445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455408	1.00[ASN][1000 genomes]
rs6455409	1.00[ASN][1000 genomes]
rs6899313	1.00[ASN][1000 genomes]
rs6899520	1.00[ASN][1000 genomes]
rs6914378	1.00[ASN][1000 genomes]
rs6937195	1.00[ASN][1000 genomes]
rs6941623	1.00[ASN][1000 genomes]
rs72926558	1.00[ASN][1000 genomes]
rs73502802	1.00[ASN][1000 genomes]
rs73746998	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73747002	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739792	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773806	0.89[AFR][1000 genomes]
rs9342811	1.00[ASN][1000 genomes]
rs9342813	1.00[ASN][1000 genomes]
rs9342814	1.00[ASN][1000 genomes]
rs9346438	1.00[ASN][1000 genomes]
rs9351802	1.00[ASN][1000 genomes]
rs9354961	1.00[ASN][1000 genomes]
rs9360439	1.00[ASN][1000 genomes]
rs9364135	1.00[ASN][1000 genomes]
rs9446350	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446351	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455335	1.00[ASN][1000 genomes]
rs9455336	1.00[ASN][1000 genomes]
rs9455364	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455370	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527265	chr6:71867477-71902656	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv886150	chr6:71888871-71936292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71891800-71897600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:71891800-71907200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:71892400-71897600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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