Variant report

Variant	rs1935792
Chromosome Location	chr6:71875250-71875251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OGFRL1-9	chr6:71874779-71875473	NONHSAT113463

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1013408	1.00[ASN][1000 genomes]
rs10806642	1.00[ASN][1000 genomes]
rs10806645	1.00[ASN][1000 genomes]
rs10806646	1.00[ASN][1000 genomes]
rs10945289	1.00[ASN][1000 genomes]
rs10945293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967291	1.00[ASN][1000 genomes]
rs12055466	1.00[ASN][1000 genomes]
rs12055852	1.00[ASN][1000 genomes]
rs12110395	1.00[ASN][1000 genomes]
rs12205990	1.00[ASN][1000 genomes]
rs1418679	1.00[ASN][1000 genomes]
rs1418680	1.00[ASN][1000 genomes]
rs1418681	1.00[ASN][1000 genomes]
rs1418683	1.00[ASN][1000 genomes]
rs1539424	1.00[ASN][1000 genomes]
rs1539425	1.00[ASN][1000 genomes]
rs1539426	1.00[ASN][1000 genomes]
rs1739801	1.00[ASN][1000 genomes]
rs1739805	1.00[ASN][1000 genomes]
rs1739808	1.00[ASN][1000 genomes]
rs1775549	1.00[ASN][1000 genomes]
rs1832948	1.00[ASN][1000 genomes]
rs1832949	1.00[ASN][1000 genomes]
rs1857218	1.00[ASN][1000 genomes]
rs1935793	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935796	1.00[ASN][1000 genomes]
rs1935797	1.00[ASN][1000 genomes]
rs1935798	1.00[ASN][1000 genomes]
rs1935799	1.00[ASN][1000 genomes]
rs2096216	1.00[ASN][1000 genomes]
rs2096217	1.00[ASN][1000 genomes]
rs2153912	1.00[ASN][1000 genomes]
rs2207677	1.00[ASN][1000 genomes]
rs2347922	1.00[ASN][1000 genomes]
rs4434432	1.00[ASN][1000 genomes]
rs4707897	1.00[ASN][1000 genomes]
rs4707898	1.00[ASN][1000 genomes]
rs57458638	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57813102	0.94[AFR][1000 genomes]
rs58391752	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60360675	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61020445	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455408	1.00[ASN][1000 genomes]
rs6455409	1.00[ASN][1000 genomes]
rs6899313	1.00[ASN][1000 genomes]
rs6899520	1.00[ASN][1000 genomes]
rs6914378	1.00[ASN][1000 genomes]
rs6937195	1.00[ASN][1000 genomes]
rs6941623	1.00[ASN][1000 genomes]
rs72926558	1.00[ASN][1000 genomes]
rs73502802	1.00[ASN][1000 genomes]
rs73746998	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73747002	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739792	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9342811	1.00[ASN][1000 genomes]
rs9342813	1.00[ASN][1000 genomes]
rs9342814	1.00[ASN][1000 genomes]
rs9346438	1.00[ASN][1000 genomes]
rs9351802	1.00[ASN][1000 genomes]
rs9354961	1.00[ASN][1000 genomes]
rs9360439	1.00[ASN][1000 genomes]
rs9364135	1.00[ASN][1000 genomes]
rs9446350	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446351	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455335	1.00[ASN][1000 genomes]
rs9455336	1.00[ASN][1000 genomes]
rs9455364	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455370	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527265	chr6:71867477-71902656	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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