Variant report

Variant	rs9354961
Chromosome Location	chr6:71782303-71782304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr6:71782247-71782587	U2OS	brain:	n/a	n/a
2	KAP1	chr6:71782040-71782690	HEK293	kidney:	n/a	n/a
3	KAP1	chr6:71782100-71782737	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000219669	TF binding region

Extended variants
information (count: 81 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1013408	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1033609	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10806642	1.00[ASN][1000 genomes]
rs10806645	1.00[ASN][1000 genomes]
rs10806646	1.00[ASN][1000 genomes]
rs10945289	1.00[ASN][1000 genomes]
rs10945293	1.00[ASN][1000 genomes]
rs11759339	1.00[CHB][hapmap]
rs11967291	1.00[ASN][1000 genomes]
rs12055466	1.00[ASN][1000 genomes]
rs12055852	1.00[ASN][1000 genomes]
rs12110395	1.00[ASN][1000 genomes]
rs12205990	1.00[ASN][1000 genomes]
rs1418679	1.00[ASN][1000 genomes]
rs1418680	1.00[ASN][1000 genomes]
rs1418681	1.00[ASN][1000 genomes]
rs1418683	1.00[ASN][1000 genomes]
rs1539424	1.00[ASN][1000 genomes]
rs1539425	1.00[ASN][1000 genomes]
rs1539426	1.00[ASN][1000 genomes]
rs16869607	1.00[CHB][hapmap]
rs1739801	1.00[ASN][1000 genomes]
rs1739805	1.00[ASN][1000 genomes]
rs1739807	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1739808	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1775549	1.00[ASN][1000 genomes]
rs1832948	1.00[ASN][1000 genomes]
rs1832949	1.00[ASN][1000 genomes]
rs1857218	1.00[ASN][1000 genomes]
rs1935792	1.00[ASN][1000 genomes]
rs1935793	1.00[ASN][1000 genomes]
rs1935796	1.00[ASN][1000 genomes]
rs1935797	1.00[ASN][1000 genomes]
rs1935798	1.00[ASN][1000 genomes]
rs1935799	1.00[ASN][1000 genomes]
rs2096216	1.00[ASN][1000 genomes]
rs2096217	1.00[ASN][1000 genomes]
rs2153912	1.00[ASN][1000 genomes]
rs2207677	1.00[ASN][1000 genomes]
rs2347919	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2347922	1.00[ASN][1000 genomes]
rs4434432	1.00[ASN][1000 genomes]
rs4706479	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4707897	1.00[ASN][1000 genomes]
rs4707898	1.00[ASN][1000 genomes]
rs57458638	1.00[ASN][1000 genomes]
rs58391752	1.00[ASN][1000 genomes]
rs60360675	1.00[ASN][1000 genomes]
rs61020445	1.00[ASN][1000 genomes]
rs6455408	1.00[ASN][1000 genomes]
rs6455409	1.00[ASN][1000 genomes]
rs6899313	1.00[ASN][1000 genomes]
rs6899520	1.00[ASN][1000 genomes]
rs6907179	1.00[CHB][hapmap]
rs6911809	1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6914378	1.00[ASN][1000 genomes]
rs6937195	1.00[ASN][1000 genomes]
rs6941623	1.00[ASN][1000 genomes]
rs72926558	1.00[ASN][1000 genomes]
rs73502802	1.00[ASN][1000 genomes]
rs73746998	1.00[ASN][1000 genomes]
rs73747002	1.00[ASN][1000 genomes]
rs743026	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7739792	1.00[ASN][1000 genomes]
rs7774025	1.00[CHB][hapmap]
rs926931	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs926932	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9342811	1.00[ASN][1000 genomes]
rs9342813	1.00[ASN][1000 genomes]
rs9342814	1.00[ASN][1000 genomes]
rs9346438	1.00[ASN][1000 genomes]
rs9351802	1.00[ASN][1000 genomes]
rs9360439	1.00[ASN][1000 genomes]
rs9364128	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9364135	1.00[ASN][1000 genomes]
rs9446350	1.00[ASN][1000 genomes]
rs9446351	1.00[ASN][1000 genomes]
rs9455335	1.00[ASN][1000 genomes]
rs9455336	1.00[ASN][1000 genomes]
rs9455364	1.00[ASN][1000 genomes]
rs9455370	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9354961	OGFRL1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71781800-71782800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:71782000-71782800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:71782200-71782600	Enhancers	HSMM	muscle
4	chr6:71782200-71783000	Enhancers	NHDF-Ad	bronchial

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