Variant report

Variant	rs60044577
Chromosome Location	chr6:71896638-71896639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1857219	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58929625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60308924	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60360675	0.89[AFR][1000 genomes]
rs61020445	0.89[AFR][1000 genomes]
rs6921431	1.00[AMR][1000 genomes]
rs7772426	1.00[AMR][1000 genomes]
rs7773806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527265	chr6:71867477-71902656	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv886150	chr6:71888871-71936292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71891800-71897600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:71891800-71907200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:71892400-71897600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:71896400-71896800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:71896600-71898000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:71896600-71898000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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