Variant report

Variant	rs10945291
Chromosome Location	chr6:71863420-71863421
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10806642	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10806645	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10806646	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10945289	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12055374	0.93[AFR][1000 genomes]
rs12055466	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12055851	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12055852	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12205990	0.93[EUR][1000 genomes]
rs1418679	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1418680	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1418681	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1418683	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1539424	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1539425	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1539426	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1739805	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1857218	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1935796	0.93[EUR][1000 genomes]
rs1935797	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1935798	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1935799	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2153912	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2207677	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2347922	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4434432	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4707897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4707898	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4707899	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6455408	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6455409	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6899313	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6899520	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6914378	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6937195	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6937381	0.80[AMR][1000 genomes]
rs6941623	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9342811	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9342813	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9342814	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9346438	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9351802	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9360439	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9364135	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71856400-71863600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:71862000-71868000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:71862600-71863600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:71863000-71863600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:71863400-71864200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:71863400-71864400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:71863400-71864800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:71863400-71865000	Enhancers	Cortex derived primary cultured neurospheres	brain

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