Variant report
| Variant | rs2348138 |
|---|---|
| Chromosome Location | chr6:71881784-71881785 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10806642 | 0.81[EUR][1000 genomes] |
| rs10806645 | 0.83[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs10806646 | 0.84[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs10945289 | 0.81[EUR][1000 genomes] |
| rs12055466 | 0.81[EUR][1000 genomes] |
| rs12055852 | 0.81[EUR][1000 genomes] |
| rs1418679 | 0.81[EUR][1000 genomes] |
| rs1418680 | 0.81[EUR][1000 genomes] |
| rs1418681 | 0.81[EUR][1000 genomes] |
| rs1418683 | 0.81[EUR][1000 genomes] |
| rs1539424 | 0.81[EUR][1000 genomes] |
| rs1739805 | 0.81[EUR][1000 genomes] |
| rs1857218 | 0.81[EUR][1000 genomes] |
| rs1935797 | 0.81[EUR][1000 genomes] |
| rs1935798 | 0.81[EUR][1000 genomes] |
| rs1935799 | 0.81[EUR][1000 genomes] |
| rs2153912 | 0.81[EUR][1000 genomes] |
| rs2207677 | 0.81[EUR][1000 genomes] |
| rs2347922 | 0.81[EUR][1000 genomes] |
| rs6455408 | 0.81[EUR][1000 genomes] |
| rs6455409 | 0.81[EUR][1000 genomes] |
| rs6899313 | 0.81[EUR][1000 genomes] |
| rs6899520 | 0.81[EUR][1000 genomes] |
| rs6914378 | 0.81[EUR][1000 genomes] |
| rs6937195 | 0.81[EUR][1000 genomes] |
| rs6941623 | 0.81[EUR][1000 genomes] |
| rs9342811 | 0.81[EUR][1000 genomes] |
| rs9342814 | 0.81[EUR][1000 genomes] |
| rs9346438 | 0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs9351802 | 0.81[EUR][1000 genomes] |
| rs9360439 | 0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9364135 | 0.97[AFR][1000 genomes];0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527265 | chr6:71867477-71902656 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv886149 | chr6:71875777-71936292 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:71880600-71881800 | Enhancers | Fetal Intestine Large | intestine |
