Variant report

Variant	nsv971928
Chromosome Location	chr11:9561378-9586236
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:34)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:9572220..9575143-chr11:9594929..9596738,4	K562	blood:
2	chr11:9577852..9580847-chr11:9583001..9585793,2	K562	blood:
3	chr11:9570291..9573673-chr11:9600141..9602765,3	K562	blood:
4	chr11:9571322..9573839-chr11:9593135..9594742,2	K562	blood:
5	chr11:9568845..9571687-chr11:9584887..9588647,3	MCF-7	breast:
6	chr11:9566972..9569525-chr11:9570398..9574349,5	K562	blood:
7	chr11:9560214..9562995-chr11:9591613..9593139,2	MCF-7	breast:
8	chr11:9571631..9575267-chr11:9586177..9589837,7	K562	blood:
9	chr11:9571631..9575267-chr11:9586177..9589837,7	K562	blood:
10	chr11:9566467..9568443-chr11:9592829..9595633,2	MCF-7	breast:
11	chr11:9555259..9558705-chr11:9585485..9589925,6	MCF-7	breast:
12	chr11:9480647..9483053-chr11:9572089..9575362,3	K562	blood:
13	chr11:9480505..9483830-chr11:9585814..9588292,3	MCF-7	breast:
14	chr11:9559963..9561888-chr11:9567378..9569097,2	MCF-7	breast:
15	chr11:9555607..9558694-chr11:9571396..9573627,3	K562	blood:
16	chr11:9559272..9561544-chr11:9571539..9573463,3	K562	blood:
17	chr11:9559963..9561888-chr11:9567378..9569097,2	MCF-7	breast:
18	chr11:9481046..9484761-chr11:9586134..9589089,3	K562	blood:
19	chr11:9559272..9561544-chr11:9571539..9573463,3	K562	blood:
20	chr11:9553327..9556356-chr11:9558618..9561853,3	K562	blood:
21	chr11:9480647..9483053-chr11:9573431..9575362,2	K562	blood:
22	chr11:9570030..9575978-chr11:9591683..9598745,10	K562	blood:
23	chr11:9572234..9575598-chr11:9578464..9581447,3	K562	blood:
24	chr11:9566972..9569525-chr11:9570398..9574349,5	K562	blood:
25	chr11:9568560..9570708-chr11:9596092..9598915,2	MCF-7	breast:
26	chr11:9549118..9551478-chr11:9570161..9571670,2	K562	blood:
27	chr11:9551354..9552960-chr11:9583061..9585366,2	MCF-7	breast:
28	chr11:9577852..9580847-chr11:9583001..9585793,2	K562	blood:
29	chr11:9572234..9575598-chr11:9578464..9581447,3	K562	blood:
30	chr11:9571631..9575583-chr11:9586034..9589231,7	K562	blood:
31	chr11:9571631..9575583-chr11:9586034..9589231,7	K562	blood:
32	chr11:9586141..9589428-chr11:9634451..9638092,8	K562	blood:
33	chr11:9556608..9559728-chr11:9560496..9563324,3	K562	blood:
34	chr11:9568845..9571687-chr11:9584887..9588647,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000243869	chromatin interactions
ENSG00000166478	chromatin interactions
ENSG00000166483	chromatin interactions
ENSG00000268403	chromatin interactions

Extended variants
information (count: 821 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:821 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs148542427	chr11:9561395-9561396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs575217580	chr11:9561490-9561491	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs575262174	chr11:9561506-9561507	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs537703418	chr11:9561512-9561513	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs544220445	chr11:9561515-9561516	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs557607763	chr11:9561531-9561532	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs577489585	chr11:9561535-9561536	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs142870995	chr11:9561567-9561568	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs151048120	chr11:9561600-9561601	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs573202836	chr11:9561603-9561604	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs542209162	chr11:9561621-9561622	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs35529216	chr11:9561625-9561626	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs529960258	chr11:9561640-9561641	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs549642965	chr11:9561654-9561655	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs181641440	chr11:9561696-9561697	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs141230096	chr11:9561770-9561771	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs117717442	chr11:9561821-9561822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs185244650	chr11:9561906-9561907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs374432027	chr11:9561907-9561908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs534381513	chr11:9561938-9561939	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs548181785	chr11:9561950-9561951	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs377258027	chr11:9561971-9561972	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs375969528	chr11:9561988-9561989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs537766552	chr11:9562038-9562039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs557669079	chr11:9562042-9562043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs374333252	chr11:9562078-9562079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs371968275	chr11:9562087-9562088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs571097390	chr11:9562102-9562103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs540019577	chr11:9562117-9562118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs57063603	chr11:9562151-9562152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs573303719	chr11:9562327-9562328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs541932203	chr11:9562333-9562334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs555370448	chr11:9562344-9562345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs575218968	chr11:9562361-9562362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs61876805	chr11:9562405-9562406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs12790510	chr11:9562545-9562546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs61876806	chr11:9562638-9562639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs563241703	chr11:9562713-9562714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs560512204	chr11:9562883-9562884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs532229034	chr11:9562886-9562887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs111742713	chr11:9563124-9563125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs61876807	chr11:9563207-9563208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs11500790	chr11:9563211-9563212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs199660482	chr11:9563273-9563274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs78351918	chr11:9563364-9563365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs11499963	chr11:9563437-9563438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs554896058	chr11:9563608-9563609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs200282685	chr11:9563946-9563947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs34740389	chr11:9564022-9564023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs548677952	chr11:9564538-9564539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Breast cancer	19432969	CNVD
Alzheimer''s disease	17576883	CNVD
Long-qt syndrome	17576883	CNVD
Emphysema	19352772	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Chordoma	18071362	CNVD
Breast cancer	16608533	CNVD
Cancer	21183584	CNVD
Gastric adenocarcinoma	19115996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Neuroblastoma	21124317	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Schizophrenia	21399695	CNVD
Gastric cancer	16891809	CNVD
Cancer	17160897	CNVD
Multiple myeloma	16616336	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21785460	CNVD
Ependymoma	20639864	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:214 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9538800-9562000	Weak transcription	Small Intestine	intestine
2	chr11:9547600-9569800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:9547800-9586600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:9549400-9581000	Weak transcription	Primary B cells from cord blood	blood
5	chr11:9549800-9578200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr11:9550600-9586600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:9551000-9581200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:9551200-9570600	Weak transcription	Thymus	Thymus
9	chr11:9551400-9562600	Weak transcription	Pancreas	Pancrea
10	chr11:9551400-9582600	Weak transcription	Primary T cells from cord blood	blood
11	chr11:9551800-9573400	Weak transcription	Right Ventricle	heart
12	chr11:9553000-9573400	Weak transcription	Gastric	stomach
13	chr11:9555200-9571800	Weak transcription	Ovary	ovary
14	chr11:9556200-9570000	Weak transcription	HSMMtube	muscle
15	chr11:9556400-9561400	Weak transcription	Fetal Intestine Small	intestine
16	chr11:9557000-9573600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:9557200-9562000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:9557200-9579000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:9557400-9568000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:9557400-9584400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:9558000-9568000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:9558200-9571600	Weak transcription	Adipose Nuclei	Adipose
23	chr11:9561400-9561600	Enhancers	Fetal Lung	lung
24	chr11:9561400-9561800	Enhancers	Fetal Intestine Small	intestine
25	chr11:9561600-9573600	Weak transcription	Fetal Lung	lung
26	chr11:9565000-9580600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr11:9566400-9587400	Weak transcription	Psoas Muscle	Psoas
28	chr11:9567400-9568000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:9567400-9568000	Weak transcription	Fetal Stomach	stomach
30	chr11:9567400-9573400	Weak transcription	Left Ventricle	heart
31	chr11:9567600-9568600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
32	chr11:9567800-9568400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:9568000-9568200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:9568000-9568400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:9568000-9568600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:9568000-9568600	ZNF genes & repeats	Fetal Stomach	stomach
37	chr11:9568000-9569600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:9568200-9568600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
39	chr11:9568200-9570600	Weak transcription	Fetal Intestine Small	intestine
40	chr11:9568200-9573200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:9568400-9571200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:9568400-9571600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:9568400-9573000	Weak transcription	HUVEC	blood vessel
44	chr11:9568600-9569400	Weak transcription	Fetal Stomach	stomach
45	chr11:9568600-9573400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr11:9568600-9573400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr11:9569600-9584400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:9570200-9573200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr11:9570200-9573400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:9570600-9570800	Enhancers	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links