Variant report

Variant	rs11499963
Chromosome Location	chr11:9563437-9563438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv971928	chr11:9561378-9586236	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9547600-9569800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr11:9547800-9586600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr11:9549400-9581000	Weak transcription	Primary B cells from cord blood	blood
4	chr11:9549800-9578200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:9550600-9586600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:9551000-9581200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:9551200-9570600	Weak transcription	Thymus	Thymus
8	chr11:9551400-9582600	Weak transcription	Primary T cells from cord blood	blood
9	chr11:9551800-9573400	Weak transcription	Right Ventricle	heart
10	chr11:9553000-9573400	Weak transcription	Gastric	stomach
11	chr11:9555200-9571800	Weak transcription	Ovary	ovary
12	chr11:9556200-9570000	Weak transcription	HSMMtube	muscle
13	chr11:9557000-9573600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:9557200-9579000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:9557400-9568000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:9557400-9584400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:9558000-9568000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:9558200-9571600	Weak transcription	Adipose Nuclei	Adipose
19	chr11:9561600-9573600	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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