Variant report

Variant	nsv973382
Chromosome Location	chr9:99894731-99916071
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTSL2-6	chr9:99906742-99907022	NONHSAT133477
2	lnc-CTSL2-6	chr9:99906923-99907022	NONHSAT133476
3	lnc-CTSL2-6	chr9:99906140-99906208	NONHSAT133476
4	lnc-CTSL2-6	chr9:99910243-99911530	NONHSAT133476
5	lnc-CTSL2-6	chr9:99910243-99911530	NONHSAT133477
6	lnc-CTSL2-5	chr9:99915509-99916020	NONHSAT133483
7	lnc-CTSL2-6	chr9:99901930-99902236	NONHSAT133476

Extended variants
information (count: 782 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:782 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs546469608	chr9:99894740-99894741	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs112922280	chr9:99894745-99894746	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs376913267	chr9:99894782-99894783	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs541610462	chr9:99894783-99894784	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs564250863	chr9:99894901-99894902	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs560196726	chr9:99894914-99894915	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs13298460	chr9:99894953-99894954	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs527356225	chr9:99894962-99894963	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs376798846	chr9:99894968-99894969	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs118179831	chr9:99894980-99894981	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs566218928	chr9:99894996-99894997	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs530347086	chr9:99895018-99895019	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs186226725	chr9:99895030-99895031	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs191512702	chr9:99895036-99895037	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs540655100	chr9:99895129-99895130	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs548339627	chr9:99895140-99895141	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs569924382	chr9:99895208-99895209	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs72747741	chr9:99895247-99895248	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs537100554	chr9:99895299-99895300	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs202161320	chr9:99895302-99895303	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs183119582	chr9:99895304-99895305	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs534760936	chr9:99895325-99895326	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs570966836	chr9:99895391-99895392	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs534694452	chr9:99895394-99895395	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs553361935	chr9:99895423-99895424	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs113059014	chr9:99895484-99895485	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs535767464	chr9:99895503-99895504	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs557155042	chr9:99895545-99895546	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs73549978	chr9:99895552-99895553	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs546058529	chr9:99895559-99895560	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs564009322	chr9:99895561-99895562	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs188603064	chr9:99895571-99895572	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs563494697	chr9:99895574-99895575	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs534242925	chr9:99895601-99895602	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs561738604	chr9:99895602-99895603	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs530289568	chr9:99895603-99895604	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs118087616	chr9:99895642-99895643	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs2001382	chr9:99895662-99895663	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs531000390	chr9:99895718-99895719	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs552773465	chr9:99895750-99895751	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs147982587	chr9:99895788-99895789	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs535143181	chr9:99895802-99895803	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs111647494	chr9:99895822-99895823	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs568478007	chr9:99895876-99895877	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs372961386	chr9:99895877-99895878	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs535703788	chr9:99895884-99895885	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs113726278	chr9:99895909-99895910	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs575641152	chr9:99895999-99896000	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs60971320	chr9:99896011-99896012	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs557952592	chr9:99896059-99896060	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Biliary cancer	19435499	CNVD
small cell lung cancer	20016488	CNVD
Intracranial aneurysm	16715129	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Basal cell nevus syndrome	21572526	CNVD
Mental retardation	19951919	CNVD
Retinoblastoma	22278416	CNVD
9q22.3 microdeletion syndrome	22283845	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
overgrowth syndrome	16570072	CNVD
Neurodevelopmental disorder	22521361	CNVD
Nicotine dependence	17160897	CNVD
Mantle cell lymphoma	19029149	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:189 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99875800-99895800	Strong transcription	HUES48 Cell Line	embryonic stem cell
2	chr9:99882000-99896600	Weak transcription	Right Atrium	heart
3	chr9:99882000-99897400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:99884000-99897000	Weak transcription	Dnd41	blood
5	chr9:99889200-99895800	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:99889400-99908200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:99892800-99895600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:99892800-99895800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:99893000-99895600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr9:99893800-99896400	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr9:99893800-99896400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:99894000-99898800	Weak transcription	Spleen	Spleen
13	chr9:99894200-99896000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:99894400-99898800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr9:99894400-99900400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr9:99894600-99895600	Strong transcription	H9 Cell Line	embryonic stem cell
17	chr9:99894600-99901400	Weak transcription	Pancreas	Pancrea
18	chr9:99895400-99895800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:99895600-99896000	Enhancers	Fetal Intestine Large	intestine
20	chr9:99895600-99896600	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr9:99895600-99898000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr9:99895600-99901000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:99895800-99897800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr9:99895800-99898800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr9:99895800-99900800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr9:99895800-99902000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:99896000-99897800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr9:99896000-99898400	Weak transcription	Fetal Intestine Large	intestine
29	chr9:99896400-99897200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr9:99896400-99898600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr9:99896600-99898400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr9:99897200-99899800	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr9:99897800-99902600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr9:99897800-99907600	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr9:99898000-99902200	Strong transcription	H9 Cell Line	embryonic stem cell
36	chr9:99898400-99899200	Enhancers	Fetal Intestine Large	intestine
37	chr9:99898400-99908600	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr9:99898600-99898800	Genic enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr9:99898600-99899200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr9:99898800-99899000	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr9:99898800-99899000	Enhancers	Spleen	Spleen
42	chr9:99898800-99899200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:99898800-99899400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
44	chr9:99898800-99908000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr9:99899000-99900200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr9:99899400-99899600	Genic enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr9:99899600-99900400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr9:99899800-99900600	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr9:99900200-99902400	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr9:99900400-99901000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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