Variant report

Variant	rs552773465
Chromosome Location	chr9:99895750-99895751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv972432	chr9:99874607-99958095	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv973382	chr9:99894731-99916071	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	lncRNA	n/a	inside rSNPs	diseases
4	nsv931946	chr9:99895658-100005099	Bivalent/Poised TSS Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99875800-99895800	Strong transcription	HUES48 Cell Line	embryonic stem cell
2	chr9:99882000-99896600	Weak transcription	Right Atrium	heart
3	chr9:99882000-99897400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:99884000-99897000	Weak transcription	Dnd41	blood
5	chr9:99889200-99895800	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:99889400-99908200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:99892800-99895800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:99893800-99896400	Strong transcription	H1 Cell Line	embryonic stem cell
9	chr9:99893800-99896400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:99894000-99898800	Weak transcription	Spleen	Spleen
11	chr9:99894200-99896000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:99894400-99898800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:99894400-99900400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:99894600-99901400	Weak transcription	Pancreas	Pancrea
15	chr9:99895400-99895800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:99895600-99896000	Enhancers	Fetal Intestine Large	intestine
17	chr9:99895600-99896600	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr9:99895600-99898000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:99895600-99901000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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