Variant report

Variant	nsv973456
Chromosome Location	chr9:26805892-26810507
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IFT74-1	chr9:26805818-26806505	NONHSAT130596

Extended variants
information (count: 96 )
Associated
traits (count: 116 )

Variant overlapped rSNPs/rCNVs (count:96 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs182995870	chr9:26805897-26805898	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs567723068	chr9:26805901-26805902	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs7851761	chr9:26805909-26805910	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs185924079	chr9:26805934-26805935	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs146922952	chr9:26805961-26805962	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs148063964	chr9:26805978-26805979	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs376886699	chr9:26805983-26805984	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs191880763	chr9:26806001-26806002	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs118011565	chr9:26806028-26806029	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs573374815	chr9:26806092-26806093	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs540653806	chr9:26806248-26806249	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs141764720	chr9:26806251-26806252	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs558749874	chr9:26806307-26806308	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs150140897	chr9:26806331-26806332	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs183725931	chr9:26806343-26806344	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs544974814	chr9:26806365-26806366	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs563553343	chr9:26806375-26806376	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs115397202	chr9:26806380-26806381	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs189115920	chr9:26806389-26806390	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs11792146	chr9:26806410-26806411	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs561387356	chr9:26806470-26806471	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs192253963	chr9:26806473-26806474	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs376929956	chr9:26806483-26806484	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs369080679	chr9:26806484-26806485	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs571542013	chr9:26806488-26806489	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs532886702	chr9:26806491-26806492	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs570630397	chr9:26808509-26808510	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs537610872	chr9:26808526-26808527	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs556256581	chr9:26808557-26808558	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs543206667	chr9:26808574-26808575	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs201952978	chr9:26808612-26808613	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs143206768	chr9:26808626-26808627	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs541851325	chr9:26808654-26808655	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs75787134	chr9:26808674-26808675	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs80292208	chr9:26808728-26808729	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs546471570	chr9:26808740-26808741	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs140356328	chr9:26808778-26808779	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs531941624	chr9:26808856-26808857	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs543998557	chr9:26808886-26808887	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs562592278	chr9:26808943-26808944	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs185462293	chr9:26809009-26809010	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs1414798	chr9:26809022-26809023	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs145423473	chr9:26809057-26809058	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs79791516	chr9:26809062-26809063	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs542124978	chr9:26809072-26809073	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs138335765	chr9:26809085-26809086	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs552456834	chr9:26809095-26809096	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs570622775	chr9:26809103-26809104	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs376250230	chr9:26809125-26809126	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs10967545	chr9:26809226-26809227	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:116)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Pancreatic cancer	21811587	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD
Glioblastoma multiforme	21525872	CNVD
Epilepsy	22083797	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26808400-26809600	Weak transcription	HMEC	breast
2	chr9:26808400-26810800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:26809200-26810200	Enhancers	NHDF-Ad	bronchial
4	chr9:26809400-26811000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:26809600-26810200	Enhancers	HMEC	breast
6	chr9:26809600-26810200	Enhancers	NHEK	skin
7	chr9:26809600-26811000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:26810200-26811200	Weak transcription	NHDF-Ad	bronchial

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