Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10511796	0.80[CHB][hapmap]
rs10757630	0.90[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs10812467	0.94[ASN][1000 genomes]
rs10812490	0.80[EUR][1000 genomes]
rs10812491	0.80[EUR][1000 genomes]
rs10812494	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10967541	1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10967560	0.84[CHB][hapmap]
rs10967581	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[EUR][1000 genomes]
rs10967586	0.80[CHB][hapmap]
rs10967597	1.00[CEU][hapmap]
rs12238035	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1336337	0.90[EUR][1000 genomes]
rs1414798	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17760820	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17833941	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2184738	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs3739547	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs3739548	0.93[EUR][1000 genomes]
rs3739550	0.80[CHB][hapmap];0.93[EUR][1000 genomes]
rs7018943	0.84[CHB][hapmap]
rs7019034	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7019075	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7857466	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7857990	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7872666	0.93[EUR][1000 genomes]
rs7873073	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv973456	chr9:26805892-26810507	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26808400-26809600	Weak transcription	HMEC	breast
2	chr9:26808400-26810800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:26809200-26810200	Enhancers	NHDF-Ad	bronchial

Quick Search: