Variant report

Variant	rs10967586
Chromosome Location	chr9:26895808-26895809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:26891080..26895841-chr9:26945501..26948974,8	K562	blood:
2	chr9:26892381..26894407-chr9:26894414..26897617,3	MCF-7	breast:
3	chr9:26892235..26894838-chr9:26895765..26898172,3	MCF-7	breast:
4	chr9:26891939..26894308-chr9:26895080..26897868,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IFT74-5	chr9:26895676-26895968	NONHSAT130600

Variant related genes	Relation type
ENSG00000120159	Chromatin interaction
ENSG00000096872	Chromatin interaction
ENSG00000137055	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10511792	0.83[CEU][hapmap]
rs10511795	0.83[CEU][hapmap]
rs10511796	0.90[CHB][hapmap]
rs10511797	0.83[CEU][hapmap]
rs10738762	0.89[JPT][hapmap]
rs10757635	0.89[JPT][hapmap]
rs10812480	0.84[CHB][hapmap]
rs10812485	0.90[CHB][hapmap]
rs10812494	0.90[JPT][hapmap]
rs10812502	0.81[ASN][1000 genomes]
rs10812503	0.84[JPT][hapmap]
rs10812506	0.82[ASN][1000 genomes]
rs10812507	0.85[JPT][hapmap]
rs10812509	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs10812510	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs10812513	0.84[CHB][hapmap]
rs10812517	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs10812518	0.83[JPT][hapmap]
rs10967560	0.95[CHB][hapmap]
rs10967566	0.90[CHB][hapmap]
rs10967575	0.83[ASN][1000 genomes]
rs10967578	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967581	0.95[CHB][hapmap]
rs10967597	0.86[JPT][hapmap]
rs10967611	0.81[CHB][hapmap]
rs10967621	0.90[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs10967622	0.80[ASN][1000 genomes]
rs10967623	0.80[ASN][1000 genomes]
rs10967627	0.90[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs10967630	0.90[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs10967633	0.90[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs10967635	0.89[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs10967636	0.82[ASN][1000 genomes]
rs10967649	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs10967650	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs10967652	0.85[JPT][hapmap]
rs10967661	0.84[CHB][hapmap]
rs10967678	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs10967679	0.85[JPT][hapmap]
rs10967681	0.90[CHB][hapmap]
rs10967688	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs11534184	0.80[ASN][1000 genomes]
rs11555693	0.82[ASN][1000 genomes]
rs12235490	0.82[ASN][1000 genomes]
rs12236850	0.84[CHB][hapmap]
rs12237867	0.81[ASN][1000 genomes]
rs1336332	0.83[CEU][hapmap]
rs1336337	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs1541144	0.85[JPT][hapmap]
rs16910873	0.83[CEU][hapmap]
rs17694127	0.84[CEU][hapmap]
rs17760820	0.90[CHB][hapmap]
rs17833941	0.90[JPT][hapmap]
rs3737226	0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs3739544	0.90[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs3739547	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs3739548	0.93[ASN][1000 genomes]
rs3739550	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs3758218	0.84[JPT][hapmap]
rs4621911	0.85[JPT][hapmap]
rs55827505	0.80[ASN][1000 genomes]
rs57450012	0.80[ASN][1000 genomes]
rs59159685	0.85[ASN][1000 genomes]
rs60841248	0.82[ASN][1000 genomes]
rs6475945	0.90[JPT][hapmap]
rs6475954	0.85[JPT][hapmap]
rs7018585	0.85[JPT][hapmap]
rs7018943	0.95[CHB][hapmap]
rs7018962	0.83[CEU][hapmap]
rs7019034	0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs7019075	0.88[ASN][1000 genomes]
rs7031984	0.82[CHB][hapmap]
rs7034888	0.82[ASN][1000 genomes]
rs7034899	0.82[ASN][1000 genomes]
rs7035447	0.89[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs7036871	0.84[CEU][hapmap]
rs7038218	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs7042133	0.85[ASN][1000 genomes]
rs7042447	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7044910	0.84[CEU][hapmap]
rs7045339	0.84[CHB][hapmap]
rs7856462	0.90[JPT][hapmap]
rs7857447	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs7857466	0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs7857669	0.84[JPT][hapmap]
rs7860542	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7863476	0.89[JPT][hapmap]
rs7868158	0.89[JPT][hapmap]
rs7869798	0.90[CHB][hapmap]
rs7871668	0.85[JPT][hapmap]
rs7872496	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7872666	0.84[ASN][1000 genomes]
rs7873073	0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs7874940	0.90[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs7875068	0.84[JPT][hapmap]
rs7875171	0.90[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs9644870	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26892800-26916200	Weak transcription	Small Intestine	intestine
2	chr9:26893000-26905600	Weak transcription	Lung	lung
3	chr9:26893000-26916000	Weak transcription	Left Ventricle	heart
4	chr9:26893000-26916000	Weak transcription	Pancreas	Pancrea
5	chr9:26893000-26916200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:26893000-26922600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:26893000-26924200	Weak transcription	Esophagus	oesophagus
8	chr9:26893200-26905600	Weak transcription	Ovary	ovary
9	chr9:26893200-26923200	Weak transcription	Right Ventricle	heart
10	chr9:26893400-26896200	Weak transcription	Brain Angular Gyrus	brain
11	chr9:26893400-26896200	Weak transcription	Brain Hippocampus Middle	brain
12	chr9:26893400-26896200	Weak transcription	Brain Substantia Nigra	brain
13	chr9:26893400-26901000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:26893400-26901000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:26893400-26901200	Weak transcription	Gastric	stomach
16	chr9:26893400-26903200	Weak transcription	Primary B cells from cord blood	blood
17	chr9:26893400-26904000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:26893400-26904000	Weak transcription	HUVEC	blood vessel
19	chr9:26893400-26904400	Weak transcription	Fetal Brain Male	brain
20	chr9:26893400-26904600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:26893400-26904600	Weak transcription	NH-A	brain
22	chr9:26893400-26904800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr9:26893400-26905200	Weak transcription	Colon Smooth Muscle	Colon
24	chr9:26893400-26905200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr9:26893400-26905400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:26893400-26905400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr9:26893400-26905400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr9:26893400-26905400	Weak transcription	NHDF-Ad	bronchial
29	chr9:26893400-26905600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr9:26893400-26905800	Weak transcription	Fetal Stomach	stomach
31	chr9:26893400-26914800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr9:26893400-26916000	Weak transcription	Fetal Lung	lung
33	chr9:26893400-26916800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr9:26893400-26925000	Weak transcription	Stomach Mucosa	stomach
35	chr9:26893400-26936400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr9:26893400-26936400	Weak transcription	Psoas Muscle	Psoas
37	chr9:26893600-26896200	Weak transcription	Brain Anterior Caudate	brain
38	chr9:26893600-26896200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr9:26893600-26900600	Weak transcription	HSMM	muscle
40	chr9:26893600-26900800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:26893600-26901000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr9:26893600-26901200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:26893600-26901200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr9:26893600-26903000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr9:26893600-26903000	Weak transcription	A549	lung
46	chr9:26893600-26903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr9:26893600-26903600	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr9:26893600-26903800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr9:26893600-26904000	Weak transcription	Fetal Thymus	thymus
50	chr9:26893600-26904200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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