Variant report

Variant	rs10967661
Chromosome Location	chr9:27011367-27011368
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10511796	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[EUR][1000 genomes]
rs10511798	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10738762	0.85[CHD][hapmap]
rs10757635	0.85[CHD][hapmap]
rs10812490	0.83[AMR][1000 genomes]
rs10812491	0.83[AMR][1000 genomes]
rs10812494	0.83[AMR][1000 genomes]
rs10812502	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10812503	0.85[CHD][hapmap]
rs10812505	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10812506	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10812509	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.89[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10812510	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10812513	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10812514	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10812517	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10812518	0.81[CHD][hapmap]
rs10812522	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10812524	0.91[EUR][1000 genomes]
rs10967581	0.81[CHD][hapmap]
rs10967586	0.84[CHB][hapmap]
rs10967597	0.83[AMR][1000 genomes]
rs10967599	1.00[CEU][hapmap]
rs10967602	0.94[EUR][1000 genomes]
rs10967609	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967611	1.00[CEU][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967612	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10967614	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967621	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967622	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967623	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967627	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967630	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967633	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967635	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967636	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967646	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10967649	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10967650	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10967651	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967662	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10967666	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10967668	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10967669	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10967670	0.81[ASN][1000 genomes]
rs10967672	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10967673	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10967678	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10967681	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10967682	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10967688	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967694	0.94[EUR][1000 genomes]
rs10967695	0.94[EUR][1000 genomes]
rs10967699	0.91[EUR][1000 genomes]
rs10967701	0.91[EUR][1000 genomes]
rs10967717	1.00[CEU][hapmap]
rs10967719	1.00[CEU][hapmap]
rs11534184	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11534185	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11555693	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11562224	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12235490	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12236404	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12236850	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];0.89[YRI][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12237867	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12337896	0.85[CHD][hapmap]
rs12684983	0.91[EUR][1000 genomes]
rs1336337	0.82[CHB][hapmap]
rs17833941	0.84[JPT][hapmap];0.83[AMR][1000 genomes]
rs1819539	0.82[ASN][1000 genomes]
rs2225720	0.82[ASN][1000 genomes]
rs3737226	0.90[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3739544	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3739547	0.84[CHB][hapmap];0.95[CHD][hapmap]
rs3739550	0.84[CHB][hapmap]
rs3758218	0.83[CHD][hapmap]
rs55827505	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55860736	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55870543	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56307252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56903929	0.91[EUR][1000 genomes]
rs57450012	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57692080	0.91[EUR][1000 genomes]
rs60281060	0.94[EUR][1000 genomes]
rs60841248	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7018943	0.81[CHD][hapmap]
rs7019034	0.90[CHB][hapmap]
rs7024327	0.94[EUR][1000 genomes]
rs7031903	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7031984	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7034888	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7034899	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7035447	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7040505	0.84[ASN][1000 genomes]
rs7045339	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72703105	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72703112	0.88[ASN][1000 genomes]
rs72719536	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72719538	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7849248	0.88[CHD][hapmap]
rs7857447	0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7857466	0.90[CHB][hapmap]
rs7857669	0.85[CHD][hapmap]
rs7865952	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7869798	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[EUR][1000 genomes]
rs7873073	0.90[CHB][hapmap];0.97[CHD][hapmap]
rs7874940	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7875171	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9644870	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26957000-27024000	Weak transcription	Esophagus	oesophagus
2	chr9:26957200-27026600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr9:26957200-27040000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr9:26974200-27023600	Weak transcription	Fetal Brain Female	brain
5	chr9:26976800-27017800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:26977200-27019400	Weak transcription	NH-A	brain
7	chr9:26977800-27026000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:26979400-27024000	Weak transcription	Small Intestine	intestine
9	chr9:26982800-27023800	Weak transcription	Lung	lung
10	chr9:26983600-27023800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:26985200-27011800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr9:26985200-27011800	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:26985200-27015800	Weak transcription	Brain Angular Gyrus	brain
14	chr9:26985200-27016200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:26985200-27017400	Weak transcription	Brain Substantia Nigra	brain
16	chr9:26985200-27024000	Weak transcription	Right Ventricle	heart
17	chr9:26985200-27024000	Weak transcription	HSMM	muscle
18	chr9:26985200-27063800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr9:26985400-27012200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr9:26985400-27012400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr9:26985400-27013000	Weak transcription	Brain Hippocampus Middle	brain
22	chr9:26985400-27015600	Weak transcription	Primary T cells from cord blood	blood
23	chr9:26985400-27015800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr9:26985400-27017400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:26985400-27017400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr9:26985400-27017800	Weak transcription	Fetal Thymus	thymus
27	chr9:26985400-27024000	Weak transcription	A549	lung
28	chr9:26985600-27024400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr9:26985800-27018800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr9:26986000-27012200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:26986800-27016000	Weak transcription	Ovary	ovary
32	chr9:26987200-27017200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr9:26987200-27023800	Weak transcription	HSMMtube	muscle
34	chr9:26987400-27019000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:26987400-27024000	Weak transcription	Aorta	Aorta
36	chr9:26987600-27012000	Weak transcription	Stomach Smooth Muscle	stomach
37	chr9:26987800-27016000	Weak transcription	Adipose Nuclei	Adipose
38	chr9:26990800-27013000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:26991400-27017800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr9:26991600-27016200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr9:26991600-27017400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr9:26991800-27058000	Weak transcription	NHDF-Ad	bronchial
43	chr9:26992800-27017200	Weak transcription	Fetal Stomach	stomach
44	chr9:26993000-27012000	Weak transcription	Fetal Lung	lung
45	chr9:26993000-27012200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr9:26993000-27012200	Weak transcription	Left Ventricle	heart
47	chr9:26993200-27012000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr9:26993600-27015800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr9:26993800-27013200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr9:26994000-27012000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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