Variant report

Variant	rs72719536
Chromosome Location	chr9:26940153-26940154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26938009..26940590-chr9:26940591..26942601,2	K562	blood:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10511796	0.97[EUR][1000 genomes]
rs10511798	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10812490	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10812491	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10812494	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10812495	0.87[AMR][1000 genomes]
rs10812502	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10812505	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10812506	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10812509	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10812510	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10812513	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10812514	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10812517	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10812522	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10812524	0.88[EUR][1000 genomes]
rs10967581	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10967597	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10967599	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10967602	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10967609	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10967611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10967612	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10967614	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10967621	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967622	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10967623	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967627	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10967630	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10967633	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10967635	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967636	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10967646	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967649	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10967650	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10967651	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967661	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967662	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967666	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967668	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967669	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967672	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967673	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967678	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967681	0.94[EUR][1000 genomes]
rs10967682	0.89[EUR][1000 genomes]
rs10967688	0.94[EUR][1000 genomes]
rs10967694	0.91[EUR][1000 genomes]
rs10967695	0.91[EUR][1000 genomes]
rs10967699	0.88[EUR][1000 genomes]
rs10967701	0.88[EUR][1000 genomes]
rs11534184	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11534185	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11555693	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11562224	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12235490	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12236404	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12236850	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12237867	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12684983	0.88[EUR][1000 genomes]
rs1336337	0.82[AMR][1000 genomes]
rs17760820	0.82[AMR][1000 genomes]
rs17833941	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs3737226	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3739544	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3739547	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs3739548	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55827505	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55860736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55870543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56307252	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56903929	0.88[EUR][1000 genomes]
rs57450012	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57692080	0.88[EUR][1000 genomes]
rs60281060	0.91[EUR][1000 genomes]
rs60841248	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7019034	0.87[AMR][1000 genomes]
rs7019075	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7024327	0.91[EUR][1000 genomes]
rs7031903	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031984	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7034888	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7034899	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7035447	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7045339	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72703105	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719538	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7857447	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7857466	0.87[AMR][1000 genomes]
rs7857990	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7865952	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7869798	0.94[EUR][1000 genomes]
rs7872666	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7873073	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7874940	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7875171	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9644870	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26916800-26945200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:26925800-26945200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:26926000-26945200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:26926000-26945200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:26926000-26945400	Weak transcription	HSMMtube	muscle
6	chr9:26926600-26941600	Weak transcription	HepG2	liver
7	chr9:26926600-26944200	Weak transcription	NHEK	skin
8	chr9:26926600-26945600	Weak transcription	Fetal Kidney	kidney
9	chr9:26927400-26943800	Weak transcription	Pancreas	Pancrea
10	chr9:26927400-26945600	Weak transcription	Fetal Thymus	thymus
11	chr9:26927800-26945600	Weak transcription	Colonic Mucosa	Colon
12	chr9:26928400-26940200	Weak transcription	HUVEC	blood vessel
13	chr9:26928400-26941000	Weak transcription	Thymus	Thymus
14	chr9:26928400-26945200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr9:26928400-26945400	Weak transcription	NH-A	brain
16	chr9:26928600-26943600	Weak transcription	NHLF	lung
17	chr9:26928600-26945000	Weak transcription	Osteobl	bone
18	chr9:26928600-26945600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:26928800-26943800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:26928800-26944400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:26928800-26944600	Weak transcription	HMEC	breast
22	chr9:26930200-26940400	Weak transcription	Primary T cells from cord blood	blood
23	chr9:26932400-26945400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr9:26933000-26940200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:26935200-26943000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr9:26935200-26945400	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr9:26936400-26945400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr9:26936600-26944200	Weak transcription	Liver	Liver
29	chr9:26936800-26943200	Weak transcription	Ovary	ovary
30	chr9:26936800-26943200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr9:26936800-26944000	Weak transcription	Brain Angular Gyrus	brain
32	chr9:26936800-26944600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr9:26936800-26945200	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr9:26936800-26945200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr9:26936800-26945400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr9:26936800-26945600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr9:26936800-26945600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr9:26936800-26945600	Weak transcription	Aorta	Aorta
39	chr9:26937000-26940200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr9:26937000-26941200	Weak transcription	Left Ventricle	heart
41	chr9:26937200-26941000	Weak transcription	Small Intestine	intestine
42	chr9:26937200-26945200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr9:26937400-26940600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr9:26937800-26940200	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr9:26938000-26944000	Weak transcription	Colon Smooth Muscle	Colon
46	chr9:26938200-26944600	Weak transcription	Brain Anterior Caudate	brain
47	chr9:26938400-26941000	Weak transcription	Dnd41	blood
48	chr9:26938400-26942600	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr9:26938400-26944000	Weak transcription	HSMM	muscle
50	chr9:26938400-26945200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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