Variant report

Variant	rs10967669
Chromosome Location	chr9:27024177-27024178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10511796	0.94[EUR][1000 genomes]
rs10511798	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10812490	0.83[AMR][1000 genomes]
rs10812491	0.83[AMR][1000 genomes]
rs10812494	0.83[AMR][1000 genomes]
rs10812502	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10812505	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10812506	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10812509	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10812510	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10812513	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10812514	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10812515	0.83[ASN][1000 genomes]
rs10812517	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10812522	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10812524	0.91[EUR][1000 genomes]
rs10967597	0.83[AMR][1000 genomes]
rs10967602	0.94[EUR][1000 genomes]
rs10967609	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967611	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967612	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10967614	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967621	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967622	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967623	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967627	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967630	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967633	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967635	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967636	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10967646	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10967649	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10967650	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10967651	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967661	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10967662	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10967666	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10967668	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10967670	0.84[ASN][1000 genomes]
rs10967672	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10967673	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10967678	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10967681	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10967682	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10967688	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10967694	0.94[EUR][1000 genomes]
rs10967695	0.94[EUR][1000 genomes]
rs10967699	0.91[EUR][1000 genomes]
rs10967701	0.91[EUR][1000 genomes]
rs11534184	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11534185	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11555693	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11562224	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12235490	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12236404	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12236850	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12237867	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12684983	0.91[EUR][1000 genomes]
rs17833941	0.83[AMR][1000 genomes]
rs1819539	0.83[ASN][1000 genomes]
rs2225720	0.83[ASN][1000 genomes]
rs3737226	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3739544	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55827505	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55860736	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55870543	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56307252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56903929	0.91[EUR][1000 genomes]
rs57450012	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57692080	0.91[EUR][1000 genomes]
rs60281060	0.94[EUR][1000 genomes]
rs60841248	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7024327	0.94[EUR][1000 genomes]
rs7031903	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7031984	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7034888	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7034899	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7035447	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7040505	0.81[ASN][1000 genomes]
rs7045339	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72703105	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72703112	0.84[ASN][1000 genomes]
rs72719536	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72719538	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7857447	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7865952	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7869798	0.91[EUR][1000 genomes]
rs7874940	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7875171	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9644870	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26957200-27026600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr9:26957200-27040000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr9:26977800-27026000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:26985200-27063800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr9:26985600-27024400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:26991800-27058000	Weak transcription	NHDF-Ad	bronchial
7	chr9:27006600-27024200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr9:27009800-27070000	Weak transcription	Psoas Muscle	Psoas
9	chr9:27011000-27024200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:27011200-27037400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr9:27011600-27026400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:27012000-27048800	Weak transcription	HepG2	liver
13	chr9:27012600-27026200	Weak transcription	Placenta	Placenta
14	chr9:27013200-27025400	Weak transcription	HUVEC	blood vessel
15	chr9:27014000-27025800	Weak transcription	Stomach Mucosa	stomach
16	chr9:27014400-27024200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr9:27014400-27060800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr9:27014400-27068200	Weak transcription	Fetal Heart	heart
19	chr9:27016000-27025800	Weak transcription	GM12878-XiMat	blood
20	chr9:27016200-27025400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr9:27017600-27025400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr9:27018400-27065200	Weak transcription	Osteobl	bone
23	chr9:27018600-27024200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr9:27018600-27029400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr9:27018800-27026200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr9:27019200-27061800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr9:27019400-27024200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr9:27020800-27026200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr9:27022600-27036200	Weak transcription	NHEK	skin
30	chr9:27023400-27025200	Strong transcription	Brain Angular Gyrus	brain
31	chr9:27023400-27025400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr9:27023400-27025400	Strong transcription	Fetal Lung	lung
33	chr9:27023600-27024400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr9:27023600-27024600	Strong transcription	Primary T cells from cord blood	blood
35	chr9:27023600-27025200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:27023600-27025200	ZNF genes & repeats	Fetal Brain Female	brain
37	chr9:27023600-27025400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr9:27023600-27025400	ZNF genes & repeats	Fetal Intestine Small	intestine
39	chr9:27023600-27025400	ZNF genes & repeats	Fetal Stomach	stomach
40	chr9:27023800-27024200	Strong transcription	Primary hematopoietic stem cells	blood
41	chr9:27023800-27024200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr9:27023800-27024400	Strong transcription	Gastric	stomach
43	chr9:27023800-27024400	Strong transcription	Lung	lung
44	chr9:27023800-27024400	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr9:27023800-27024600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:27023800-27024600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr9:27023800-27024600	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr9:27023800-27024600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr9:27023800-27024600	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr9:27023800-27024600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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