Variant report

Variant	rs10812524
Chromosome Location	chr9:27075026-27075027
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10511796	0.91[EUR][1000 genomes]
rs10511798	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10812502	0.88[EUR][1000 genomes]
rs10812505	0.91[EUR][1000 genomes]
rs10812506	0.88[EUR][1000 genomes]
rs10812509	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10812510	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10812513	0.91[EUR][1000 genomes]
rs10812514	0.91[EUR][1000 genomes]
rs10812517	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10812522	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10967602	0.91[EUR][1000 genomes]
rs10967609	0.85[EUR][1000 genomes]
rs10967611	0.83[EUR][1000 genomes]
rs10967612	0.82[EUR][1000 genomes]
rs10967614	0.83[EUR][1000 genomes]
rs10967621	0.91[EUR][1000 genomes]
rs10967622	0.88[EUR][1000 genomes]
rs10967623	0.86[EUR][1000 genomes]
rs10967627	0.88[EUR][1000 genomes]
rs10967630	0.88[EUR][1000 genomes]
rs10967633	0.88[EUR][1000 genomes]
rs10967635	0.91[EUR][1000 genomes]
rs10967636	0.88[EUR][1000 genomes]
rs10967646	0.83[EUR][1000 genomes]
rs10967649	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10967650	0.88[EUR][1000 genomes]
rs10967651	0.83[EUR][1000 genomes]
rs10967661	0.91[EUR][1000 genomes]
rs10967662	0.91[EUR][1000 genomes]
rs10967666	0.91[EUR][1000 genomes]
rs10967668	0.91[EUR][1000 genomes]
rs10967669	0.91[EUR][1000 genomes]
rs10967672	0.91[EUR][1000 genomes]
rs10967673	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967678	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10967681	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967682	0.83[EUR][1000 genomes]
rs10967688	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967694	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10967695	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10967697	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10967699	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10967701	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10967710	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10967711	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10967717	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10967719	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11534184	0.88[EUR][1000 genomes]
rs11534185	0.86[EUR][1000 genomes]
rs11555693	0.88[EUR][1000 genomes]
rs11562224	0.88[EUR][1000 genomes]
rs12235354	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12235490	0.88[EUR][1000 genomes]
rs12236404	0.85[EUR][1000 genomes]
rs12236850	0.81[EUR][1000 genomes]
rs12237867	0.88[EUR][1000 genomes]
rs12684983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1577330	0.81[ASN][1000 genomes]
rs1591355	0.81[ASN][1000 genomes]
rs2095405	0.81[ASN][1000 genomes]
rs3737226	0.83[EUR][1000 genomes]
rs3739544	0.88[EUR][1000 genomes]
rs55827505	0.88[EUR][1000 genomes]
rs55860736	0.80[EUR][1000 genomes]
rs55870543	0.88[EUR][1000 genomes]
rs56307252	0.91[EUR][1000 genomes]
rs56903929	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57314689	0.81[AMR][1000 genomes]
rs57450012	0.88[EUR][1000 genomes]
rs57692080	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60281060	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60841248	0.88[EUR][1000 genomes]
rs7024327	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7030567	0.81[ASN][1000 genomes]
rs7031903	0.88[EUR][1000 genomes]
rs7031984	0.88[EUR][1000 genomes]
rs7034888	0.83[EUR][1000 genomes]
rs7034899	0.88[EUR][1000 genomes]
rs7035447	0.88[EUR][1000 genomes]
rs7045339	0.88[EUR][1000 genomes]
rs72703105	0.88[EUR][1000 genomes]
rs72719536	0.88[EUR][1000 genomes]
rs72719538	0.91[EUR][1000 genomes]
rs7857447	0.91[EUR][1000 genomes]
rs7865952	0.88[EUR][1000 genomes]
rs7869798	0.88[EUR][1000 genomes]
rs7874940	0.88[EUR][1000 genomes]
rs7875171	0.88[EUR][1000 genomes]
rs9644870	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv466334	chr9:27028947-27098940	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv613944	chr9:27028947-27098940	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27024400-27082600	Weak transcription	Gastric	stomach
2	chr9:27024600-27075800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:27024600-27078600	Weak transcription	Aorta	Aorta
4	chr9:27024600-27079000	Weak transcription	Pancreas	Pancrea
5	chr9:27024600-27082400	Weak transcription	Primary T cells from cord blood	blood
6	chr9:27024600-27083400	Weak transcription	Left Ventricle	heart
7	chr9:27024600-27085000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:27024600-27086800	Weak transcription	Right Ventricle	heart
9	chr9:27024800-27094800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:27025200-27078000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr9:27025400-27075600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:27038000-27085000	Weak transcription	Brain Hippocampus Middle	brain
13	chr9:27048800-27076200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr9:27053800-27086800	Weak transcription	HSMM	muscle
15	chr9:27055200-27087000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:27057400-27083000	Weak transcription	Liver	Liver
17	chr9:27058400-27075200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr9:27060200-27077000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr9:27060200-27085400	Weak transcription	Adipose Nuclei	Adipose
20	chr9:27062200-27081400	Weak transcription	Fetal Intestine Large	intestine
21	chr9:27067200-27081200	Weak transcription	Spleen	Spleen
22	chr9:27068000-27087400	Weak transcription	Lung	lung
23	chr9:27068200-27079400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr9:27070200-27080600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:27070600-27076000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr9:27072200-27087000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr9:27073000-27086800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:27074000-27085400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr9:27074200-27085400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr9:27074400-27076600	Strong transcription	Ovary	ovary
31	chr9:27074400-27077200	Strong transcription	Fetal Intestine Small	intestine
32	chr9:27074600-27077600	Strong transcription	Fetal Stomach	stomach
33	chr9:27075000-27076800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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