Variant report

Variant	rs10967614
Chromosome Location	chr9:26943770-26943771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26882668..26884290-chr9:26943587..26946347,2	MCF-7	breast:
2	chr9:26943098..26949574-chr9:26949927..26957421,13	K562	blood:

Variant related genes	Relation type
ENSG00000096872	Chromatin interaction
ENSG00000234676	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10511796	0.92[EUR][1000 genomes]
rs10511798	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10812490	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10812491	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10812494	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10812495	0.87[AMR][1000 genomes]
rs10812502	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10812505	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10812506	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10812509	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10812510	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10812513	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10812514	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10812517	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10812522	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10812524	0.83[EUR][1000 genomes]
rs10967581	0.87[AMR][1000 genomes]
rs10967597	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10967599	0.85[AMR][1000 genomes]
rs10967602	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967609	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10967611	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10967612	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10967621	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967622	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967623	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967627	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967630	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967633	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967635	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967636	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967646	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10967649	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10967650	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967651	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10967661	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967662	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967666	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967668	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967669	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967672	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967673	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10967678	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967681	0.89[EUR][1000 genomes]
rs10967682	0.84[EUR][1000 genomes]
rs10967688	0.89[EUR][1000 genomes]
rs10967694	0.86[EUR][1000 genomes]
rs10967695	0.86[EUR][1000 genomes]
rs10967699	0.83[EUR][1000 genomes]
rs10967701	0.83[EUR][1000 genomes]
rs11534184	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11534185	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11555693	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11562224	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12235490	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12236404	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12236850	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12237867	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12684983	0.83[EUR][1000 genomes]
rs1336337	0.82[AMR][1000 genomes]
rs17760820	0.82[AMR][1000 genomes]
rs17833941	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs3737226	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3739544	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3739547	0.87[AMR][1000 genomes]
rs3739548	0.87[AMR][1000 genomes]
rs55827505	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55860736	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55870543	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56307252	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56903929	0.83[EUR][1000 genomes]
rs57450012	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57692080	0.83[EUR][1000 genomes]
rs60281060	0.86[EUR][1000 genomes]
rs60841248	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7019034	0.87[AMR][1000 genomes]
rs7019075	0.85[AMR][1000 genomes]
rs7024327	0.86[EUR][1000 genomes]
rs7031903	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7031984	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7034888	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7034899	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7035447	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7045339	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72703105	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72719536	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72719538	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7857447	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7857466	0.87[AMR][1000 genomes]
rs7857990	0.87[AMR][1000 genomes]
rs7865952	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7869798	0.89[EUR][1000 genomes]
rs7872666	0.83[AMR][1000 genomes]
rs7873073	0.87[AMR][1000 genomes]
rs7874940	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7875171	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9644870	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26916800-26945200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:26925800-26945200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:26926000-26945200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:26926000-26945200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:26926000-26945400	Weak transcription	HSMMtube	muscle
6	chr9:26926600-26944200	Weak transcription	NHEK	skin
7	chr9:26926600-26945600	Weak transcription	Fetal Kidney	kidney
8	chr9:26927400-26943800	Weak transcription	Pancreas	Pancrea
9	chr9:26927400-26945600	Weak transcription	Fetal Thymus	thymus
10	chr9:26927800-26945600	Weak transcription	Colonic Mucosa	Colon
11	chr9:26928400-26945200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:26928400-26945400	Weak transcription	NH-A	brain
13	chr9:26928600-26945000	Weak transcription	Osteobl	bone
14	chr9:26928600-26945600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:26928800-26943800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:26928800-26944400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr9:26928800-26944600	Weak transcription	HMEC	breast
18	chr9:26932400-26945400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr9:26935200-26945400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr9:26936400-26945400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr9:26936600-26944200	Weak transcription	Liver	Liver
22	chr9:26936800-26944000	Weak transcription	Brain Angular Gyrus	brain
23	chr9:26936800-26944600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr9:26936800-26945200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr9:26936800-26945200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr9:26936800-26945400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr9:26936800-26945600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:26936800-26945600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:26936800-26945600	Weak transcription	Aorta	Aorta
30	chr9:26937200-26945200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr9:26938000-26944000	Weak transcription	Colon Smooth Muscle	Colon
32	chr9:26938200-26944600	Weak transcription	Brain Anterior Caudate	brain
33	chr9:26938400-26944000	Weak transcription	HSMM	muscle
34	chr9:26938400-26945200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:26938400-26945200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:26938400-26945400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr9:26938400-26945400	Weak transcription	Fetal Lung	lung
38	chr9:26938400-26945600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:26938600-26943800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr9:26938600-26945400	Weak transcription	Fetal Intestine Small	intestine
41	chr9:26938600-26945600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:26938600-26945600	Weak transcription	Primary B cells from peripheral blood	blood
43	chr9:26938600-26945600	Weak transcription	Fetal Stomach	stomach
44	chr9:26938800-26944600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:26938800-26945400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr9:26939200-26945200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:26939200-26945600	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr9:26939600-26945200	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr9:26939600-26945600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr9:26939600-26945600	Weak transcription	Fetal Intestine Large	intestine

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