Variant report

Variant	rs10967611
Chromosome Location	chr9:26936515-26936516
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:26934470..26938073-chr9:26945974..26949391,4	K562	blood:
2	chr9:26934470..26938073-chr9:26945974..26949091,3	K562	blood:
3	chr9:26891082..26893488-chr9:26933500..26937576,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137055	Chromatin interaction
ENSG00000120159	Chromatin interaction
ENSG00000096872	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10511796	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10511798	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10812480	0.83[GIH][hapmap];0.91[MEX][hapmap]
rs10812490	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10812491	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10812494	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10812495	0.87[AMR][1000 genomes]
rs10812502	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10812505	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10812506	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10812509	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10812510	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10812513	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10812514	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10812517	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10812522	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10812524	0.83[EUR][1000 genomes]
rs10967541	1.00[MEX][hapmap]
rs10967566	0.83[GIH][hapmap]
rs10967581	1.00[ASW][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10967586	0.81[CHB][hapmap]
rs10967597	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10967599	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes]
rs10967602	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10967609	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10967612	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10967614	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10967621	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967622	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967623	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967627	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967630	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967633	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967635	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967636	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967646	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10967649	1.00[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10967650	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967651	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10967661	1.00[CEU][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967662	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967666	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967668	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967669	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967672	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967673	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10967678	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10967681	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[EUR][1000 genomes]
rs10967682	0.84[EUR][1000 genomes]
rs10967688	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[EUR][1000 genomes]
rs10967694	0.86[EUR][1000 genomes]
rs10967695	0.86[EUR][1000 genomes]
rs10967699	0.83[EUR][1000 genomes]
rs10967701	0.83[EUR][1000 genomes]
rs10967717	1.00[CEU][hapmap]
rs10967719	1.00[CEU][hapmap];0.82[MEX][hapmap]
rs11534184	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11534185	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11555693	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11562224	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12235490	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12236404	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12236850	1.00[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12237867	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12684983	0.83[EUR][1000 genomes]
rs1336337	0.89[CHB][hapmap];0.82[AMR][1000 genomes]
rs17760820	1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs17833941	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs3737226	0.86[CHB][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3739544	1.00[CEU][hapmap];0.81[CHB][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3739547	1.00[ASW][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs3739548	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs3739550	0.81[CHB][hapmap]
rs55827505	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55860736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55870543	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56307252	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56903929	0.83[EUR][1000 genomes]
rs57450012	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57692080	0.83[EUR][1000 genomes]
rs60281060	0.86[EUR][1000 genomes]
rs60841248	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7018943	0.83[GIH][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap]
rs7019034	0.85[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs7019075	1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7024327	0.86[EUR][1000 genomes]
rs7031903	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7031984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7034888	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7034899	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7035447	0.84[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7045339	1.00[CEU][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72703105	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72719536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72719538	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7857447	0.81[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7857466	0.86[CHB][hapmap];0.87[AMR][1000 genomes]
rs7857990	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7865952	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7869798	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7872666	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7873073	1.00[ASW][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7874940	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7875171	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9644870	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26902800-26936600	Weak transcription	Spleen	Spleen
2	chr9:26905400-26938200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:26905800-26937400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:26906200-26936600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:26916800-26945200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:26917200-26936600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:26920400-26937400	Weak transcription	Fetal Heart	heart
8	chr9:26925000-26936600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:26925000-26936600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:26925000-26936600	Weak transcription	Lung	lung
11	chr9:26925800-26945200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:26926000-26936600	Weak transcription	Aorta	Aorta
13	chr9:26926000-26936600	Weak transcription	Left Ventricle	heart
14	chr9:26926000-26936600	Weak transcription	Right Ventricle	heart
15	chr9:26926000-26937600	Weak transcription	Brain Germinal Matrix	brain
16	chr9:26926000-26945200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:26926000-26945200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:26926000-26945400	Weak transcription	HSMMtube	muscle
19	chr9:26926600-26937400	Weak transcription	Fetal Lung	lung
20	chr9:26926600-26937800	Weak transcription	Brain Anterior Caudate	brain
21	chr9:26926600-26941600	Weak transcription	HepG2	liver
22	chr9:26926600-26944200	Weak transcription	NHEK	skin
23	chr9:26926600-26945600	Weak transcription	Fetal Kidney	kidney
24	chr9:26927400-26937800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr9:26927400-26943800	Weak transcription	Pancreas	Pancrea
26	chr9:26927400-26945600	Weak transcription	Fetal Thymus	thymus
27	chr9:26927600-26936600	Weak transcription	Fetal Brain Female	brain
28	chr9:26927800-26937800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:26927800-26945600	Weak transcription	Colonic Mucosa	Colon
30	chr9:26928000-26937400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr9:26928400-26937400	Weak transcription	Fetal Intestine Large	intestine
32	chr9:26928400-26938000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr9:26928400-26940200	Weak transcription	HUVEC	blood vessel
34	chr9:26928400-26941000	Weak transcription	Thymus	Thymus
35	chr9:26928400-26945200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr9:26928400-26945400	Weak transcription	NH-A	brain
37	chr9:26928600-26937800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr9:26928600-26938200	Weak transcription	NHDF-Ad	bronchial
39	chr9:26928600-26943600	Weak transcription	NHLF	lung
40	chr9:26928600-26945000	Weak transcription	Osteobl	bone
41	chr9:26928600-26945600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:26928800-26943800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr9:26928800-26944400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr9:26928800-26944600	Weak transcription	HMEC	breast
45	chr9:26929400-26937800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr9:26929600-26937800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:26929800-26936600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr9:26930000-26937600	Weak transcription	Adipose Nuclei	Adipose
49	chr9:26930000-26937800	Weak transcription	Fetal Muscle Trunk	muscle
50	chr9:26930000-26937800	Weak transcription	HSMM	muscle

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