Variant report
| Variant | rs10967541 |
|---|---|
| Chromosome Location | chr9:26798724-26798725 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1011358 | 0.90[EUR][1000 genomes] |
| rs10757630 | 0.94[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs10812463 | 0.80[ASN][1000 genomes] |
| rs10812464 | 0.85[ASN][1000 genomes] |
| rs10812467 | 0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10812478 | 0.84[EUR][1000 genomes] |
| rs10812480 | 1.00[CEU][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs10812485 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs10812505 | 0.91[MEX][hapmap] |
| rs10967545 | 0.90[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10967550 | 0.92[EUR][1000 genomes] |
| rs10967560 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[EUR][1000 genomes] |
| rs10967565 | 0.92[EUR][1000 genomes] |
| rs10967566 | 0.82[CEU][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs10967575 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs10967581 | 0.84[CHB][hapmap];1.00[MEX][hapmap] |
| rs10967611 | 1.00[MEX][hapmap] |
| rs10967635 | 1.00[MEX][hapmap] |
| rs10967649 | 1.00[MEX][hapmap] |
| rs12238035 | 0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12238317 | 0.90[EUR][1000 genomes] |
| rs1414798 | 0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17760657 | 0.92[EUR][1000 genomes] |
| rs17760820 | 1.00[MEX][hapmap] |
| rs2184739 | 0.92[EUR][1000 genomes] |
| rs2196179 | 0.85[ASN][1000 genomes] |
| rs3739547 | 1.00[MEX][hapmap] |
| rs7018943 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs7035447 | 1.00[MEX][hapmap] |
| rs7871868 | 0.85[EUR][1000 genomes] |
| rs7873073 | 1.00[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1026827 | chr9:26693515-26904699 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:26797000-26800800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr9:26797600-26800400 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
