Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10757630	0.94[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs10812464	0.82[ASN][1000 genomes]
rs10812480	0.85[CEU][hapmap];0.80[GIH][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap]
rs10812485	0.85[CEU][hapmap]
rs10812497	0.86[EUR][1000 genomes]
rs10967541	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10967545	0.94[ASN][1000 genomes]
rs10967560	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs10967566	0.80[GIH][hapmap];0.85[TSI][hapmap]
rs10967575	0.85[CEU][hapmap]
rs10967581	0.84[CHB][hapmap];0.92[MEX][hapmap]
rs10967611	0.91[MEX][hapmap]
rs10967635	0.92[MEX][hapmap]
rs10967649	0.91[MEX][hapmap]
rs12236850	0.92[MEX][hapmap]
rs12238035	0.86[ASN][1000 genomes]
rs1414798	0.94[ASN][1000 genomes]
rs17760820	0.92[MEX][hapmap]
rs2196179	0.82[ASN][1000 genomes]
rs3739547	0.92[MEX][hapmap]
rs7018943	0.85[CEU][hapmap];0.84[CHB][hapmap];0.80[GIH][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap]
rs7030538	0.82[YRI][hapmap]
rs7035447	0.92[MEX][hapmap]
rs7873073	0.92[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv973456	chr9:26805892-26810507	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26808400-26810800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:26809200-26810200	Enhancers	NHDF-Ad	bronchial
3	chr9:26809400-26811000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:26809600-26810200	Enhancers	HMEC	breast
5	chr9:26809600-26810200	Enhancers	NHEK	skin
6	chr9:26809600-26811000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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