Variant report

Variant	rs10967649
Chromosome Location	chr9:26993755-26993756
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26989262..26992249-chr9:26992331..26994961,3	K562	blood:

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10511796	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10511798	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10738762	0.91[CHD][hapmap]
rs10757635	0.91[CHD][hapmap]
rs10812480	0.81[CHD][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap]
rs10812490	0.81[EUR][1000 genomes]
rs10812491	0.81[EUR][1000 genomes]
rs10812494	0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs10812495	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10812502	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10812503	0.91[CHD][hapmap];0.84[JPT][hapmap]
rs10812505	1.00[CEU][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10812506	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10812507	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs10812508	0.83[ASN][1000 genomes]
rs10812509	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10812510	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10812513	1.00[CEU][hapmap];0.83[JPT][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10812514	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10812517	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10812518	0.86[CHD][hapmap];0.84[JPT][hapmap]
rs10812522	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10812524	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10967541	1.00[MEX][hapmap]
rs10967566	0.84[GIH][hapmap]
rs10967581	0.86[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap]
rs10967586	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs10967597	0.89[JPT][hapmap]
rs10967599	1.00[CEU][hapmap]
rs10967602	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10967609	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10967611	1.00[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10967612	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10967614	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10967621	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10967622	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10967623	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10967627	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10967630	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10967633	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10967635	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10967636	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10967645	0.84[JPT][hapmap]
rs10967646	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10967648	0.87[ASN][1000 genomes]
rs10967650	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10967651	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10967652	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs10967661	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10967662	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10967666	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10967668	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10967669	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10967672	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10967673	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10967678	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10967679	0.84[JPT][hapmap]
rs10967681	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10967682	0.80[EUR][1000 genomes]
rs10967688	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10967694	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10967695	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10967699	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10967701	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10967717	1.00[CEU][hapmap]
rs10967719	1.00[CEU][hapmap];0.83[MEX][hapmap]
rs11534184	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11534185	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11555693	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11562224	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12235490	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12236404	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12236850	1.00[CEU][hapmap];0.89[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12237867	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12337896	0.91[CHD][hapmap]
rs12684983	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1336337	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs1541144	0.84[JPT][hapmap]
rs17760820	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs17833941	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs3737226	0.89[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3739544	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3739547	0.84[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap]
rs3739548	0.80[ASN][1000 genomes]
rs3739550	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs3758218	0.88[CHD][hapmap];0.84[JPT][hapmap]
rs4621911	0.84[JPT][hapmap]
rs55827505	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55860736	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55870543	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56307252	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56903929	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57450012	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57692080	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60281060	0.88[EUR][1000 genomes]
rs60841248	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6475954	0.84[JPT][hapmap]
rs7018585	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs7018943	0.86[CHD][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap]
rs7019034	0.89[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7020010	0.95[JPT][hapmap]
rs7024327	0.83[EUR][1000 genomes]
rs7031903	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7031984	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7034888	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7034899	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7035447	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7038218	0.88[JPT][hapmap]
rs7045339	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72703105	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72703112	0.87[ASN][1000 genomes]
rs72719536	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72719538	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7849248	0.88[CHD][hapmap];0.95[JPT][hapmap]
rs7857447	0.84[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7857466	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs7857669	0.91[CHD][hapmap];0.84[JPT][hapmap]
rs7857990	0.81[JPT][hapmap]
rs7865952	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7869798	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7870787	0.95[JPT][hapmap]
rs7871668	0.84[JPT][hapmap]
rs7872496	0.84[JPT][hapmap]
rs7873073	0.89[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs7874940	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7875068	0.84[JPT][hapmap]
rs7875171	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9644870	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26957000-27024000	Weak transcription	Esophagus	oesophagus
2	chr9:26957200-27026600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr9:26957200-27040000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr9:26972200-26995000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:26974200-27023600	Weak transcription	Fetal Brain Female	brain
6	chr9:26976200-27003600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr9:26976600-26996800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:26976800-27017800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:26977000-26997000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:26977200-27019400	Weak transcription	NH-A	brain
11	chr9:26977400-26994400	Weak transcription	NHEK	skin
12	chr9:26977400-26998600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:26977800-26996800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr9:26977800-27026000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:26979400-27024000	Weak transcription	Small Intestine	intestine
16	chr9:26982800-26995200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr9:26982800-27023800	Weak transcription	Lung	lung
18	chr9:26983600-27023800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:26985200-26993800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:26985200-26994200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr9:26985200-26994400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr9:26985200-26995400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr9:26985200-26996600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr9:26985200-26997600	Weak transcription	Dnd41	blood
25	chr9:26985200-27011800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr9:26985200-27011800	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:26985200-27015800	Weak transcription	Brain Angular Gyrus	brain
28	chr9:26985200-27016200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr9:26985200-27017400	Weak transcription	Brain Substantia Nigra	brain
30	chr9:26985200-27024000	Weak transcription	Right Ventricle	heart
31	chr9:26985200-27024000	Weak transcription	HSMM	muscle
32	chr9:26985200-27063800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr9:26985400-26994200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr9:26985400-26995000	Weak transcription	Fetal Brain Male	brain
35	chr9:26985400-26996200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr9:26985400-26997000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr9:26985400-27001000	Weak transcription	Brain Anterior Caudate	brain
38	chr9:26985400-27003400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr9:26985400-27004000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr9:26985400-27012200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr9:26985400-27012400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr9:26985400-27013000	Weak transcription	Brain Hippocampus Middle	brain
43	chr9:26985400-27015600	Weak transcription	Primary T cells from cord blood	blood
44	chr9:26985400-27015800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr9:26985400-27017400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:26985400-27017400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr9:26985400-27017800	Weak transcription	Fetal Thymus	thymus
48	chr9:26985400-27024000	Weak transcription	A549	lung
49	chr9:26985600-27024400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr9:26985800-26996800	Weak transcription	Primary B cells from peripheral blood	blood

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