Variant report

Variant	rs16910873
Chromosome Location	chr9:26904699-26904700
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26904433..26907115-chr9:26907974..26909867,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10511791	0.87[ASW][hapmap];0.83[CEU][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10511792	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511794	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511795	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511797	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10967586	0.83[CEU][hapmap]
rs12344894	0.85[EUR][1000 genomes]
rs12353269	0.85[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs1336332	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs1541145	0.91[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694087	0.83[EUR][1000 genomes]
rs17694127	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs17694324	0.91[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694499	0.91[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17756179	0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17756299	1.00[JPT][hapmap];0.82[TSI][hapmap];1.00[ASN][1000 genomes]
rs2184740	0.98[EUR][1000 genomes]
rs56974912	0.87[EUR][1000 genomes]
rs57890470	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59100252	0.86[EUR][1000 genomes]
rs59175724	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542660	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542663	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542665	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542666	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542669	1.00[ASN][1000 genomes]
rs62542670	1.00[ASN][1000 genomes]
rs62542708	1.00[ASN][1000 genomes]
rs62544395	0.85[EUR][1000 genomes]
rs62544396	0.85[EUR][1000 genomes]
rs62544399	0.85[EUR][1000 genomes]
rs62544401	0.85[EUR][1000 genomes]
rs62544402	0.85[EUR][1000 genomes]
rs62544403	0.82[EUR][1000 genomes]
rs62544404	0.85[EUR][1000 genomes]
rs62544406	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62544411	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544412	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544413	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544434	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544435	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544437	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544440	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544453	1.00[EUR][1000 genomes]
rs62546682	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62546683	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62546685	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018962	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035755	0.83[MKK][hapmap]
rs7036055	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs7036871	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7039400	0.83[MKK][hapmap]
rs7044910	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7045881	0.83[MKK][hapmap]
rs73433937	0.98[EUR][1000 genomes]
rs73436012	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73436044	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7865596	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868649	0.85[EUR][1000 genomes]
rs7871722	0.89[EUR][1000 genomes]
rs7874676	0.89[EUR][1000 genomes]
rs7875314	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16910873	CAAP1	cis	Artery Tibial	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26892800-26916200	Weak transcription	Small Intestine	intestine
2	chr9:26893000-26905600	Weak transcription	Lung	lung
3	chr9:26893000-26916000	Weak transcription	Left Ventricle	heart
4	chr9:26893000-26916000	Weak transcription	Pancreas	Pancrea
5	chr9:26893000-26916200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:26893000-26922600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:26893000-26924200	Weak transcription	Esophagus	oesophagus
8	chr9:26893200-26905600	Weak transcription	Ovary	ovary
9	chr9:26893200-26923200	Weak transcription	Right Ventricle	heart
10	chr9:26893400-26904800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr9:26893400-26905200	Weak transcription	Colon Smooth Muscle	Colon
12	chr9:26893400-26905200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr9:26893400-26905400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:26893400-26905400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr9:26893400-26905400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr9:26893400-26905400	Weak transcription	NHDF-Ad	bronchial
17	chr9:26893400-26905600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr9:26893400-26905800	Weak transcription	Fetal Stomach	stomach
19	chr9:26893400-26914800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:26893400-26916000	Weak transcription	Fetal Lung	lung
21	chr9:26893400-26916800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:26893400-26925000	Weak transcription	Stomach Mucosa	stomach
23	chr9:26893400-26936400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr9:26893400-26936400	Weak transcription	Psoas Muscle	Psoas
25	chr9:26893600-26904800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr9:26893600-26905200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:26893600-26905200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr9:26893600-26905200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:26893600-26905200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr9:26893600-26905400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr9:26893600-26905400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr9:26893600-26905400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr9:26893600-26905400	Weak transcription	Osteobl	bone
34	chr9:26893600-26905600	Weak transcription	Primary hematopoietic stem cells	blood
35	chr9:26893600-26905600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr9:26893600-26905600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr9:26893600-26905600	Weak transcription	Thymus	Thymus
38	chr9:26893600-26906600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr9:26893600-26907600	Weak transcription	NHLF	lung
40	chr9:26893600-26912200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr9:26893600-26912400	Weak transcription	Brain Germinal Matrix	brain
42	chr9:26893600-26915400	Weak transcription	Fetal Brain Female	brain
43	chr9:26893600-26915600	Weak transcription	Fetal Kidney	kidney
44	chr9:26893600-26915800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr9:26893600-26916000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr9:26893600-26916000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr9:26893600-26916000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr9:26893800-26905000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr9:26893800-26905200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr9:26893800-26905400	Weak transcription	HMEC	breast

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