Variant report

Variant	rs62544437
Chromosome Location	chr9:26906222-26906223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26905847..26907895-chr9:26946463..26949226,2	K562	blood:
2	chr9:26904433..26907115-chr9:26907974..26909867,2	K562	blood:

Variant related genes	Relation type
ENSG00000096872	Chromatin interaction
ENSG00000137055	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10511791	0.85[EUR][1000 genomes]
rs10511792	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511794	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511795	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511797	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344894	0.90[EUR][1000 genomes]
rs12353269	0.94[EUR][1000 genomes]
rs1336332	0.92[EUR][1000 genomes]
rs1541145	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16910814	0.84[EUR][1000 genomes]
rs16910873	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694003	0.84[EUR][1000 genomes]
rs17694087	0.88[EUR][1000 genomes]
rs17694127	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17694324	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694499	1.00[ASN][1000 genomes]
rs17756179	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17756299	1.00[ASN][1000 genomes]
rs2184740	0.92[EUR][1000 genomes]
rs56974912	0.80[EUR][1000 genomes]
rs57890470	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59100252	0.81[EUR][1000 genomes]
rs59175724	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542660	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542663	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542665	1.00[ASN][1000 genomes]
rs62542666	1.00[ASN][1000 genomes]
rs62542669	1.00[ASN][1000 genomes]
rs62542670	1.00[ASN][1000 genomes]
rs62542708	1.00[ASN][1000 genomes]
rs62544395	0.90[EUR][1000 genomes]
rs62544396	0.90[EUR][1000 genomes]
rs62544399	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62544401	0.90[EUR][1000 genomes]
rs62544402	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62544403	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62544404	0.90[EUR][1000 genomes]
rs62544406	0.94[EUR][1000 genomes]
rs62544411	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544412	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544413	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544434	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544440	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544453	0.94[EUR][1000 genomes]
rs62546682	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62546683	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62546685	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018962	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036055	0.92[EUR][1000 genomes]
rs7036871	0.94[EUR][1000 genomes]
rs7044910	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73433937	0.92[EUR][1000 genomes]
rs73436012	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73436044	1.00[ASN][1000 genomes]
rs7865596	1.00[ASN][1000 genomes]
rs7868649	0.90[EUR][1000 genomes]
rs7871722	0.94[EUR][1000 genomes]
rs7874676	0.94[EUR][1000 genomes]
rs7875314	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62544437	CAAP1	cis	Artery Tibial	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26892800-26916200	Weak transcription	Small Intestine	intestine
2	chr9:26893000-26916000	Weak transcription	Left Ventricle	heart
3	chr9:26893000-26916000	Weak transcription	Pancreas	Pancrea
4	chr9:26893000-26916200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:26893000-26922600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:26893000-26924200	Weak transcription	Esophagus	oesophagus
7	chr9:26893200-26923200	Weak transcription	Right Ventricle	heart
8	chr9:26893400-26914800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:26893400-26916000	Weak transcription	Fetal Lung	lung
10	chr9:26893400-26916800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:26893400-26925000	Weak transcription	Stomach Mucosa	stomach
12	chr9:26893400-26936400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:26893400-26936400	Weak transcription	Psoas Muscle	Psoas
14	chr9:26893600-26906600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr9:26893600-26907600	Weak transcription	NHLF	lung
16	chr9:26893600-26912200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr9:26893600-26912400	Weak transcription	Brain Germinal Matrix	brain
18	chr9:26893600-26915400	Weak transcription	Fetal Brain Female	brain
19	chr9:26893600-26915600	Weak transcription	Fetal Kidney	kidney
20	chr9:26893600-26915800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:26893600-26916000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:26893600-26916000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:26893600-26916000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr9:26896000-26908000	Weak transcription	Fetal Intestine Small	intestine
25	chr9:26896600-26915400	Weak transcription	Brain Angular Gyrus	brain
26	chr9:26896800-26915800	Weak transcription	Colonic Mucosa	Colon
27	chr9:26896800-26915800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:26898200-26924400	Weak transcription	Aorta	Aorta
29	chr9:26899200-26921200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr9:26899400-26914800	Weak transcription	HepG2	liver
31	chr9:26899400-26916200	Weak transcription	NHEK	skin
32	chr9:26900600-26916200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr9:26900800-26930000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr9:26901000-26913600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr9:26901200-26935800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:26901600-26916000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr9:26901600-26920800	Weak transcription	Gastric	stomach
38	chr9:26902800-26909600	Strong transcription	HSMM	muscle
39	chr9:26902800-26936600	Weak transcription	Spleen	Spleen
40	chr9:26903000-26908200	Strong transcription	Adipose Nuclei	Adipose
41	chr9:26903000-26909200	Strong transcription	A549	lung
42	chr9:26903000-26909800	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr9:26903000-26910800	Strong transcription	Placenta	Placenta
44	chr9:26903000-26927800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr9:26903000-26929800	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr9:26903000-26935200	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr9:26903200-26906600	Strong transcription	Primary B cells from cord blood	blood
48	chr9:26903200-26928400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr9:26903200-26930000	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr9:26903200-26932600	Strong transcription	Dnd41	blood

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