Variant report

Variant	rs17694324
Chromosome Location	chr9:26916070-26916071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26916059..26918354-chr9:26923172..26926170,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137055	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10511791	0.83[EUR][1000 genomes]
rs10511792	0.91[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511794	1.00[ASN][1000 genomes]
rs10511795	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511797	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344894	0.88[EUR][1000 genomes]
rs12353269	1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs1336332	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1541145	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16910814	0.83[EUR][1000 genomes]
rs16910873	0.91[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17693864	1.00[AFR][1000 genomes]
rs17694003	0.83[EUR][1000 genomes]
rs17694087	0.86[EUR][1000 genomes]
rs17694127	0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs17694499	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17756179	0.83[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17756299	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2184740	0.90[EUR][1000 genomes]
rs56974912	0.82[AMR][1000 genomes]
rs57890470	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59175724	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542660	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542663	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542665	1.00[ASN][1000 genomes]
rs62542666	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62542669	1.00[ASN][1000 genomes]
rs62542670	1.00[ASN][1000 genomes]
rs62542708	1.00[ASN][1000 genomes]
rs62544395	0.88[EUR][1000 genomes]
rs62544396	0.88[EUR][1000 genomes]
rs62544399	0.88[EUR][1000 genomes]
rs62544401	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62544402	0.88[EUR][1000 genomes]
rs62544403	0.85[EUR][1000 genomes]
rs62544404	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62544406	0.92[EUR][1000 genomes]
rs62544411	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544412	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544413	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544434	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544435	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544437	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544453	0.92[EUR][1000 genomes]
rs62546682	1.00[ASN][1000 genomes]
rs62546683	1.00[ASN][1000 genomes]
rs62546685	1.00[ASN][1000 genomes]
rs7018962	0.91[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036055	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs7036871	0.91[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs7044910	0.91[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs73433937	0.90[EUR][1000 genomes]
rs73436012	1.00[ASN][1000 genomes]
rs73436044	1.00[ASN][1000 genomes]
rs7865596	1.00[ASN][1000 genomes]
rs7868649	0.88[EUR][1000 genomes]
rs7871722	0.92[EUR][1000 genomes]
rs7874676	0.92[EUR][1000 genomes]
rs7875314	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26892800-26916200	Weak transcription	Small Intestine	intestine
2	chr9:26893000-26916200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:26893000-26922600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:26893000-26924200	Weak transcription	Esophagus	oesophagus
5	chr9:26893200-26923200	Weak transcription	Right Ventricle	heart
6	chr9:26893400-26916800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:26893400-26925000	Weak transcription	Stomach Mucosa	stomach
8	chr9:26893400-26936400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:26893400-26936400	Weak transcription	Psoas Muscle	Psoas
10	chr9:26898200-26924400	Weak transcription	Aorta	Aorta
11	chr9:26899200-26921200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:26899400-26916200	Weak transcription	NHEK	skin
13	chr9:26900600-26916200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:26900800-26930000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:26901200-26935800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:26901600-26920800	Weak transcription	Gastric	stomach
17	chr9:26902800-26936600	Weak transcription	Spleen	Spleen
18	chr9:26903000-26927800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:26903000-26929800	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr9:26903000-26935200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr9:26903200-26928400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:26903200-26930000	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr9:26903200-26932600	Strong transcription	Dnd41	blood
24	chr9:26903200-26935200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr9:26903800-26927800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr9:26903800-26931600	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr9:26904600-26935200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:26904800-26916200	Weak transcription	Fetal Heart	heart
29	chr9:26905400-26938200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:26905800-26937400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr9:26906000-26916200	Weak transcription	HSMMtube	muscle
32	chr9:26906000-26916800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr9:26906000-26921200	Weak transcription	Fetal Brain Male	brain
34	chr9:26906200-26916200	Weak transcription	Brain Substantia Nigra	brain
35	chr9:26906200-26916200	Weak transcription	Fetal Muscle Leg	muscle
36	chr9:26906200-26928800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr9:26906200-26936600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr9:26908800-26916600	Weak transcription	Fetal Intestine Small	intestine
39	chr9:26909200-26925200	Weak transcription	K562	blood
40	chr9:26910200-26916400	Weak transcription	Fetal Stomach	stomach
41	chr9:26911200-26926000	Strong transcription	Primary T cells from cord blood	blood
42	chr9:26911600-26917000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr9:26911600-26930000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr9:26911600-26930000	Strong transcription	Placenta	Placenta
45	chr9:26912000-26928600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr9:26912000-26932600	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr9:26912800-26928000	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr9:26912800-26935000	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr9:26913200-26928400	Strong transcription	NH-A	brain
50	chr9:26913200-26932600	Strong transcription	Primary B cells from cord blood	blood

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