Variant report

Variant	rs17693864
Chromosome Location	chr9:26788017-26788018
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10511791	0.83[CEU][hapmap]
rs10511792	1.00[CEU][hapmap]
rs10511795	1.00[CEU][hapmap]
rs10511797	1.00[CEU][hapmap]
rs10967586	0.84[CEU][hapmap]
rs12353269	0.85[CEU][hapmap]
rs1336332	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1541145	0.91[CEU][hapmap]
rs16910814	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16910873	1.00[CEU][hapmap]
rs17693677	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694003	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17694127	1.00[CEU][hapmap]
rs17694324	0.91[CEU][hapmap];1.00[AFR][1000 genomes]
rs17756179	0.91[CEU][hapmap]
rs62542113	0.84[EUR][1000 genomes]
rs62542114	0.84[EUR][1000 genomes]
rs62544401	1.00[AFR][1000 genomes]
rs62544440	1.00[AFR][1000 genomes]
rs7018962	1.00[CEU][hapmap]
rs7036055	1.00[CEU][hapmap]
rs7036871	1.00[CEU][hapmap]
rs7044910	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv892860	chr9:26704385-26789940	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892861	chr9:26707333-26789940	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv613942	chr9:26722736-26789975	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv466333	chr9:26728455-26789975	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv613943	chr9:26728455-26789975	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1033113	chr9:26737203-26793584	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1032172	chr9:26742409-26789626	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26785400-26789000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr9:26785800-26788200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:26786400-26789400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr9:26786600-26789800	Weak transcription	HSMMtube	muscle
5	chr9:26787000-26788200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr9:26787200-26788200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:26787200-26788200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:26787200-26788400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:26787200-26788800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:26787600-26788800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr9:26787800-26788600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr9:26788000-26788200	Active TSS	iPS-20b Cell Line	embryonic stem cell

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