Variant report

Variant	rs16910814
Chromosome Location	chr9:26801837-26801838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IFT74-1	chr9:26801731-26802058	ENSG00000253400
2	lnc-IFT74-1	chr9:26801731-26802058	NONHSAT130596

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10511791	0.81[CEU][hapmap]
rs10511792	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10511795	1.00[CEU][hapmap]
rs10511797	1.00[CEU][hapmap]
rs10967586	0.81[CEU][hapmap]
rs12344894	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12353269	1.00[CEU][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1336332	1.00[CEU][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1541145	0.90[CEU][hapmap]
rs16910873	1.00[CEU][hapmap]
rs17693677	0.89[ASN][1000 genomes]
rs17693864	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17694003	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694087	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17694127	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17694324	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs17694499	0.90[CEU][hapmap]
rs17756179	0.90[CEU][hapmap]
rs2184740	0.81[EUR][1000 genomes]
rs57890470	0.84[EUR][1000 genomes]
rs59175724	0.83[EUR][1000 genomes]
rs62544395	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62544396	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62544399	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62544401	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62544402	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62544403	0.83[ASN][1000 genomes]
rs62544404	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62544406	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62544411	0.86[EUR][1000 genomes]
rs62544412	0.86[EUR][1000 genomes]
rs62544413	0.83[EUR][1000 genomes]
rs62544434	0.81[EUR][1000 genomes]
rs62544435	0.84[EUR][1000 genomes]
rs62544437	0.84[EUR][1000 genomes]
rs62544440	0.83[EUR][1000 genomes]
rs7018962	1.00[CEU][hapmap]
rs7036055	1.00[CEU][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7036871	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs7044910	1.00[CEU][hapmap]
rs73429891	0.91[AFR][1000 genomes]
rs7868649	0.83[EUR][1000 genomes]
rs7871722	0.86[EUR][1000 genomes]
rs7874676	0.86[EUR][1000 genomes]
rs7875314	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26800200-26802000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:26801000-26802200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr9:26801600-26802000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:26801600-26802200	Enhancers	Fetal Kidney	kidney

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