Variant report

Variant	rs17694499
Chromosome Location	chr9:26990826-26990827
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26989262..26992249-chr9:26992331..26994961,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10511792	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10511794	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511795	0.91[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511797	0.91[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12353269	1.00[JPT][hapmap]
rs1336332	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs1541145	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16910873	0.91[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694127	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs17694324	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17756179	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17756299	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2184740	0.83[EUR][1000 genomes]
rs57890470	1.00[ASN][1000 genomes]
rs59100252	0.95[EUR][1000 genomes]
rs59175724	1.00[ASN][1000 genomes]
rs62542660	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542663	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542665	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542669	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542670	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542708	1.00[ASN][1000 genomes]
rs62544401	1.00[AFR][1000 genomes]
rs62544411	1.00[ASN][1000 genomes]
rs62544412	1.00[ASN][1000 genomes]
rs62544413	1.00[ASN][1000 genomes]
rs62544434	1.00[ASN][1000 genomes]
rs62544435	1.00[ASN][1000 genomes]
rs62544437	1.00[ASN][1000 genomes]
rs62544440	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62544453	0.85[EUR][1000 genomes]
rs62546682	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62546683	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62546685	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018962	0.91[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036055	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs7036871	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs7044910	0.91[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs73433937	0.83[EUR][1000 genomes]
rs73436012	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73436044	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7865596	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26957000-27024000	Weak transcription	Esophagus	oesophagus
2	chr9:26957200-27026600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr9:26957200-27040000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr9:26969000-26991200	Weak transcription	NHDF-Ad	bronchial
5	chr9:26972200-26995000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:26974200-27023600	Weak transcription	Fetal Brain Female	brain
7	chr9:26976200-27003600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:26976600-26996800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:26976800-26993000	Weak transcription	Osteobl	bone
10	chr9:26976800-27017800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:26977000-26997000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:26977200-27019400	Weak transcription	NH-A	brain
13	chr9:26977400-26992200	Weak transcription	HMEC	breast
14	chr9:26977400-26994400	Weak transcription	NHEK	skin
15	chr9:26977400-26998600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:26977800-26996800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr9:26977800-27026000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:26979400-26993200	Weak transcription	Gastric	stomach
19	chr9:26979400-27024000	Weak transcription	Small Intestine	intestine
20	chr9:26979600-26992600	Weak transcription	Brain Germinal Matrix	brain
21	chr9:26981000-26992800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr9:26982800-26995200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr9:26982800-27023800	Weak transcription	Lung	lung
24	chr9:26983000-26991200	Weak transcription	Fetal Intestine Small	intestine
25	chr9:26983600-27023800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:26985000-26992400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr9:26985200-26992000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr9:26985200-26993000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr9:26985200-26993200	Weak transcription	Fetal Heart	heart
30	chr9:26985200-26993800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr9:26985200-26994200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr9:26985200-26994400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr9:26985200-26995400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr9:26985200-26996600	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr9:26985200-26997600	Weak transcription	Dnd41	blood
36	chr9:26985200-27011800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr9:26985200-27011800	Weak transcription	Colon Smooth Muscle	Colon
38	chr9:26985200-27015800	Weak transcription	Brain Angular Gyrus	brain
39	chr9:26985200-27016200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr9:26985200-27017400	Weak transcription	Brain Substantia Nigra	brain
41	chr9:26985200-27024000	Weak transcription	Right Ventricle	heart
42	chr9:26985200-27024000	Weak transcription	HSMM	muscle
43	chr9:26985200-27063800	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr9:26985400-26991200	Weak transcription	Fetal Lung	lung
45	chr9:26985400-26991400	Weak transcription	Left Ventricle	heart
46	chr9:26985400-26992600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr9:26985400-26994200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr9:26985400-26995000	Weak transcription	Fetal Brain Male	brain
49	chr9:26985400-26996200	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr9:26985400-26997000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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