Variant report

Variant	rs62544401
Chromosome Location	chr9:26850493-26850494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10511791	0.87[EUR][1000 genomes]
rs10511792	0.90[EUR][1000 genomes]
rs12344894	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12353269	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16910814	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16910873	0.85[EUR][1000 genomes]
rs17693864	1.00[AFR][1000 genomes]
rs17694003	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17694087	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694127	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694324	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17694499	1.00[AFR][1000 genomes]
rs2184740	0.87[EUR][1000 genomes]
rs57890470	0.90[EUR][1000 genomes]
rs59175724	0.88[EUR][1000 genomes]
rs62542666	1.00[AFR][1000 genomes]
rs62544395	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544396	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544399	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544402	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544403	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544405	0.86[AMR][1000 genomes]
rs62544406	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544411	0.96[EUR][1000 genomes]
rs62544412	0.96[EUR][1000 genomes]
rs62544413	0.92[EUR][1000 genomes]
rs62544434	0.90[EUR][1000 genomes]
rs62544435	0.90[EUR][1000 genomes]
rs62544437	0.90[EUR][1000 genomes]
rs62544440	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62544453	0.85[EUR][1000 genomes]
rs7018962	0.85[EUR][1000 genomes]
rs7036055	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036871	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7044910	0.85[EUR][1000 genomes]
rs73433937	0.83[EUR][1000 genomes]
rs7868649	1.00[EUR][1000 genomes]
rs7871722	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7874676	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7875314	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26822200-26889400	Weak transcription	Psoas Muscle	Psoas
2	chr9:26830200-26865400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:26832200-26866800	Weak transcription	Gastric	stomach
4	chr9:26832200-26878400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:26834000-26882400	Weak transcription	HUVEC	blood vessel
6	chr9:26834200-26852800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:26834200-26852800	Weak transcription	HSMMtube	muscle
8	chr9:26834200-26853400	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:26834200-26854800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:26834200-26855000	Weak transcription	Ovary	ovary
11	chr9:26834200-26858800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr9:26834200-26859000	Weak transcription	Fetal Kidney	kidney
13	chr9:26834200-26870600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:26834200-26878400	Weak transcription	Brain Angular Gyrus	brain
15	chr9:26834200-26878600	Weak transcription	Spleen	Spleen
16	chr9:26834200-26880200	Weak transcription	Lung	lung
17	chr9:26834200-26880200	Weak transcription	NHEK	skin
18	chr9:26834200-26882200	Weak transcription	HMEC	breast
19	chr9:26834200-26888200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr9:26834200-26891200	Weak transcription	NHDF-Ad	bronchial
21	chr9:26834400-26854800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr9:26836200-26854200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr9:26836400-26855000	Weak transcription	Brain Hippocampus Middle	brain
24	chr9:26836400-26859000	Weak transcription	Fetal Brain Male	brain
25	chr9:26836400-26879600	Weak transcription	Esophagus	oesophagus
26	chr9:26836600-26891400	Weak transcription	Brain Substantia Nigra	brain
27	chr9:26837400-26855200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr9:26837800-26855800	Weak transcription	Osteobl	bone
29	chr9:26838000-26878200	Weak transcription	Brain Germinal Matrix	brain
30	chr9:26838200-26853000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr9:26838200-26858800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:26838200-26879600	Weak transcription	Pancreas	Pancrea
33	chr9:26838400-26852800	Weak transcription	Aorta	Aorta
34	chr9:26838600-26854600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:26838800-26852800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr9:26838800-26852800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr9:26839000-26858600	Weak transcription	Small Intestine	intestine
38	chr9:26839400-26855600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr9:26839600-26854600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr9:26839600-26855000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr9:26840600-26859000	Weak transcription	Fetal Brain Female	brain
42	chr9:26840600-26882400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr9:26840800-26855200	Weak transcription	Fetal Lung	lung
44	chr9:26840800-26855600	Weak transcription	Brain Anterior Caudate	brain
45	chr9:26840800-26865400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr9:26840800-26879800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:26841000-26850600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr9:26841000-26852600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr9:26841000-26855600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr9:26841200-26879800	Weak transcription	Colonic Mucosa	Colon

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