Variant report

Variant	rs17694003
Chromosome Location	chr9:26801741-26801742
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IFT74-1	chr9:26801731-26802058	ENSG00000253400
2	lnc-IFT74-1	chr9:26801731-26802058	NONHSAT130596

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10511791	0.83[CEU][hapmap]
rs10511792	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10511795	1.00[CEU][hapmap]
rs10511797	1.00[CEU][hapmap]
rs10967586	0.84[CEU][hapmap]
rs12344894	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12353269	0.85[CEU][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1336332	1.00[CEU][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1541145	0.91[CEU][hapmap]
rs16910814	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16910873	1.00[CEU][hapmap]
rs17693677	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17693864	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17694087	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17694127	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17694324	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs17694499	0.91[CEU][hapmap]
rs17756179	0.91[CEU][hapmap]
rs2184740	0.81[EUR][1000 genomes]
rs57890470	0.84[EUR][1000 genomes]
rs59175724	0.83[EUR][1000 genomes]
rs62544395	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62544396	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62544399	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62544401	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62544402	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62544403	0.83[ASN][1000 genomes]
rs62544404	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62544406	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62544411	0.86[EUR][1000 genomes]
rs62544412	0.86[EUR][1000 genomes]
rs62544413	0.83[EUR][1000 genomes]
rs62544434	0.81[EUR][1000 genomes]
rs62544435	0.84[EUR][1000 genomes]
rs62544437	0.84[EUR][1000 genomes]
rs62544440	0.83[EUR][1000 genomes]
rs7018962	1.00[CEU][hapmap]
rs7036055	1.00[CEU][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7036871	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs7044910	1.00[CEU][hapmap]
rs7868649	0.83[EUR][1000 genomes]
rs7871722	0.86[EUR][1000 genomes]
rs7874676	0.86[EUR][1000 genomes]
rs7875314	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17694003	CAAP1	cis	Artery Tibial	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26800200-26802000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:26800800-26801800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr9:26801000-26802200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr9:26801600-26802000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:26801600-26802200	Enhancers	Fetal Kidney	kidney

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