Variant report

Variant	rs12353269
Chromosome Location	chr9:26850609-26850610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10511791	0.91[EUR][1000 genomes]
rs10511792	0.85[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs10511795	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs10511797	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs12344894	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336332	0.85[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541145	1.00[JPT][hapmap]
rs16910814	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16910873	0.85[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs17694003	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17694087	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694127	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694324	1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs17694499	1.00[JPT][hapmap]
rs17756179	1.00[JPT][hapmap]
rs17756299	1.00[JPT][hapmap]
rs2184740	0.90[EUR][1000 genomes]
rs57890470	0.94[EUR][1000 genomes]
rs59175724	0.92[EUR][1000 genomes]
rs62544395	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544396	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544399	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544401	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544402	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544403	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544404	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544406	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544411	1.00[EUR][1000 genomes]
rs62544412	1.00[EUR][1000 genomes]
rs62544413	0.96[EUR][1000 genomes]
rs62544434	0.94[EUR][1000 genomes]
rs62544435	0.94[EUR][1000 genomes]
rs62544437	0.94[EUR][1000 genomes]
rs62544440	0.92[EUR][1000 genomes]
rs62544453	0.89[EUR][1000 genomes]
rs7018962	0.85[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs7036055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036871	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7044910	0.85[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs73433937	0.86[EUR][1000 genomes]
rs7868649	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7871722	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7874676	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7875314	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12353269	CAAP1	cis	Artery Tibial	GTEx

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26822200-26889400	Weak transcription	Psoas Muscle	Psoas
2	chr9:26830200-26865400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:26832200-26866800	Weak transcription	Gastric	stomach
4	chr9:26832200-26878400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:26834000-26882400	Weak transcription	HUVEC	blood vessel
6	chr9:26834200-26852800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:26834200-26852800	Weak transcription	HSMMtube	muscle
8	chr9:26834200-26853400	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:26834200-26854800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:26834200-26855000	Weak transcription	Ovary	ovary
11	chr9:26834200-26858800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr9:26834200-26859000	Weak transcription	Fetal Kidney	kidney
13	chr9:26834200-26870600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:26834200-26878400	Weak transcription	Brain Angular Gyrus	brain
15	chr9:26834200-26878600	Weak transcription	Spleen	Spleen
16	chr9:26834200-26880200	Weak transcription	Lung	lung
17	chr9:26834200-26880200	Weak transcription	NHEK	skin
18	chr9:26834200-26882200	Weak transcription	HMEC	breast
19	chr9:26834200-26888200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr9:26834200-26891200	Weak transcription	NHDF-Ad	bronchial
21	chr9:26834400-26854800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr9:26836200-26854200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr9:26836400-26855000	Weak transcription	Brain Hippocampus Middle	brain
24	chr9:26836400-26859000	Weak transcription	Fetal Brain Male	brain
25	chr9:26836400-26879600	Weak transcription	Esophagus	oesophagus
26	chr9:26836600-26891400	Weak transcription	Brain Substantia Nigra	brain
27	chr9:26837400-26855200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr9:26837800-26855800	Weak transcription	Osteobl	bone
29	chr9:26838000-26878200	Weak transcription	Brain Germinal Matrix	brain
30	chr9:26838200-26853000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr9:26838200-26858800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:26838200-26879600	Weak transcription	Pancreas	Pancrea
33	chr9:26838400-26852800	Weak transcription	Aorta	Aorta
34	chr9:26838600-26854600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:26838800-26852800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr9:26838800-26852800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr9:26839000-26858600	Weak transcription	Small Intestine	intestine
38	chr9:26839400-26855600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr9:26839600-26854600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr9:26839600-26855000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr9:26840600-26859000	Weak transcription	Fetal Brain Female	brain
42	chr9:26840600-26882400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr9:26840800-26855200	Weak transcription	Fetal Lung	lung
44	chr9:26840800-26855600	Weak transcription	Brain Anterior Caudate	brain
45	chr9:26840800-26865400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr9:26840800-26879800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:26841000-26852600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr9:26841000-26855600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr9:26841200-26879800	Weak transcription	Colonic Mucosa	Colon
50	chr9:26841600-26854800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links