Variant report
Variant | nsv974290 |
---|---|
Chromosome Location | chr14:81155152-81161683 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:2 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-DIO2-7 | chr14:81158750-81159186 | l_1018_chr14:81141451-81155425_testes |
2 | lnc-DIO2-7 | chr14:81154768-81155425 | l_1018_chr14:81141451-81155425_testes |
No data |
No data |
No data |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs186811884 | chr14:81155179-81155180 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
2 | rs540841488 | chr14:81155192-81155193 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
3 | rs557516188 | chr14:81155244-81155245 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
4 | rs144429772 | chr14:81155320-81155321 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
5 | rs191586436 | chr14:81155375-81155376 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
6 | rs574306842 | chr14:81155431-81155432 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs141180319 | chr14:81155432-81155433 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs562990786 | chr14:81155449-81155450 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs576115684 | chr14:81155461-81155462 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs551813231 | chr14:81155470-81155471 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs368771550 | chr14:81155484-81155485 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs563852374 | chr14:81155490-81155491 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs113641206 | chr14:81155527-81155528 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs147375665 | chr14:81155542-81155543 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs564500178 | chr14:81155544-81155545 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs546801844 | chr14:81155610-81155611 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs140130780 | chr14:81155622-81155623 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs551378434 | chr14:81155635-81155636 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs71412393 | chr14:81155655-81155656 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs57054840 | chr14:81155656-81155657 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs60084942 | chr14:81155657-81155658 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs146828121 | chr14:81155659-81155660 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs12589458 | chr14:81155662-81155663 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
24 | rs116751569 | chr14:81155690-81155691 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs569230155 | chr14:81155693-81155694 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs188050785 | chr14:81155727-81155728 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs145532676 | chr14:81155760-81155761 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs112805345 | chr14:81155878-81155879 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs147754649 | chr14:81155899-81155900 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs373741011 | chr14:81155906-81155907 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs534113454 | chr14:81155937-81155938 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs537890970 | chr14:81155960-81155961 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs555964508 | chr14:81155988-81155989 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs139954723 | chr14:81156014-81156015 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs544843746 | chr14:81156018-81156019 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs556208396 | chr14:81156030-81156031 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs74393178 | chr14:81156038-81156039 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs540903322 | chr14:81156052-81156053 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs574858157 | chr14:81156086-81156087 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs371608641 | chr14:81156087-81156088 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs374694548 | chr14:81156106-81156107 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs563817512 | chr14:81156159-81156160 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs528223869 | chr14:81156162-81156163 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs149250288 | chr14:81156198-81156199 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs201610322 | chr14:81156199-81156200 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs546469038 | chr14:81156241-81156242 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs561967302 | chr14:81156257-81156258 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs1470640 | chr14:81156301-81156302 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
49 | rs1470639 | chr14:81156328-81156329 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
50 | rs73334800 | chr14:81156351-81156352 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
Disease | PMID | Source |
---|---|---|
Esophageal cancer | 21851588 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Retinoblastoma | 21504564 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Autism | 22495311 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Melanoma | 18172304 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Oral cancer | 21386901 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Neuroblastoma | 19435921 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Breast cancer | 17899364 | CNVD |
Gastrointestinal stromal cancer | 19259404 | CNVD |
Gastrointestinal stromal cancer | 17535989 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Paraganglioma | 17535989 | CNVD |
Pulmonary chondroma | 17535989 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Renal cell carcinoma | 21668985 | CNVD |
Chronic myeloid leukemia | 20724749 | CNVD |
Wilms tumour | 21544195 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Breast cancer | 21858162 | CNVD |
Lung cancer | 18438408 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Malignant mesothelioma | 18160781 | CNVD |
Pleural malignant mesothelioma | 18160781 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Barrett''s syndrome | 19417022 | CNVD |
Malignant fibrous histiocytomas | 21085701 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
cataract | 16735990 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Glioblastoma multiforme | 21922591 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Breast cancer | 16608533 | CNVD |
Gastrointestinal stromal cancer | 20877625 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Developmental delay | 21147756 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Breast cancer | 17603634 | CNVD |
Glioblastoma | 21080181 | CNVD |
Gastric cancer | 16891809 | CNVD |
Breast cancer | 17133270 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
Cancer | 20164920 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:81147400-81171400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
2 | chr14:81148000-81167400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
3 | chr14:81148400-81167200 | Weak transcription | Fetal Thymus | thymus |
4 | chr14:81149000-81171200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
5 | chr14:81154000-81157600 | Weak transcription | Dnd41 | blood |
6 | chr14:81157600-81157800 | Enhancers | HUES48 Cell Line | embryonic stem cell |
7 | chr14:81157600-81158000 | Enhancers | Dnd41 | blood |
8 | chr14:81158000-81159200 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
9 | chr14:81158000-81159600 | Genic enhancers | Dnd41 | blood |
10 | chr14:81158600-81159600 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
11 | chr14:81158800-81159600 | Enhancers | HUES64 Cell Line | embryonic stem cell |
12 | chr14:81158800-81159600 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
13 | chr14:81159200-81159600 | Enhancers | HUES48 Cell Line | embryonic stem cell |
14 | chr14:81159600-81162400 | Weak transcription | Dnd41 | blood |
15 | chr14:81160000-81168400 | Weak transcription | Primary T cells from cord blood | blood |