Variant report

Variant	rs1470639
Chromosome Location	chr14:81156328-81156329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10129919	0.87[CHB][hapmap]
rs10136185	0.82[ASN][1000 genomes]
rs10498551	0.86[CHB][hapmap]
rs10498552	0.95[CHB][hapmap]
rs11159475	0.87[CHB][hapmap];0.87[MEX][hapmap]
rs1117435	0.84[ASN][1000 genomes]
rs12587367	0.90[CHB][hapmap]
rs12587844	0.82[CHB][hapmap]
rs12588075	0.95[CHB][hapmap];0.87[MEX][hapmap]
rs12588311	0.81[CEU][hapmap];0.95[CHB][hapmap];0.87[AMR][1000 genomes]
rs12588325	0.94[AMR][1000 genomes]
rs12588374	0.81[CEU][hapmap];0.95[CHB][hapmap];0.96[AMR][1000 genomes]
rs12589266	0.95[CHB][hapmap]
rs12589935	0.87[CHB][hapmap];0.87[MEX][hapmap]
rs12590477	0.85[CHB][hapmap]
rs12590579	0.87[CHB][hapmap]
rs12880008	0.86[CHB][hapmap]
rs12882027	0.95[CHB][hapmap]
rs12884630	0.81[CHB][hapmap]
rs12885089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12892149	0.87[CHB][hapmap]
rs12892368	0.95[CHB][hapmap]
rs12896053	0.81[CEU][hapmap];0.95[CHB][hapmap];0.96[AMR][1000 genomes]
rs1458992	0.87[CHB][hapmap];0.87[MEX][hapmap]
rs17111032	0.91[AMR][1000 genomes]
rs17111034	0.81[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.91[AMR][1000 genomes]
rs17111035	0.81[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.91[AMR][1000 genomes]
rs17111078	0.91[CHB][hapmap]
rs17111143	0.87[CHB][hapmap];0.87[MEX][hapmap]
rs17111149	0.95[CHB][hapmap]
rs17111151	0.87[CHB][hapmap]
rs17111165	0.95[CHB][hapmap]
rs17111167	0.87[CHB][hapmap]
rs2167061	0.88[CHD][hapmap];0.83[ASN][1000 genomes]
rs2371332	0.83[ASN][1000 genomes]
rs2371414	0.91[CHB][hapmap]
rs2371417	0.95[CHB][hapmap];0.80[MEX][hapmap]
rs2840052	0.86[CHB][hapmap]
rs35114098	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35731915	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3861639	0.95[CHB][hapmap]
rs61979418	0.87[AMR][1000 genomes]
rs67921287	0.96[AMR][1000 genomes]
rs72690934	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72690937	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72690945	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs8006100	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1039554	chr14:81113167-81156335	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv1051964	chr14:81113167-81156847	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv974290	chr14:81155152-81161683	Weak transcription Enhancers Genic enhancers	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81147400-81171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:81148000-81167400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:81148400-81167200	Weak transcription	Fetal Thymus	thymus
4	chr14:81149000-81171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:81154000-81157600	Weak transcription	Dnd41	blood

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