Variant report

Variant	rs12588374
Chromosome Location	chr14:81171699-81171700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10498551	0.81[CHB][hapmap]
rs10498552	0.87[CHB][hapmap]
rs11159475	0.82[CHB][hapmap]
rs12587367	0.81[CHB][hapmap]
rs12588075	0.91[CHB][hapmap]
rs12588311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12588325	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12589266	0.86[CHB][hapmap]
rs12589935	0.82[CHB][hapmap]
rs12590477	0.83[ASN][1000 genomes]
rs12882027	0.91[CHB][hapmap]
rs12885089	0.82[CEU][hapmap];0.92[CHB][hapmap];0.98[AMR][1000 genomes]
rs12892368	0.81[CEU][hapmap];0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs12896053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458992	0.82[CHB][hapmap]
rs1470639	0.81[CEU][hapmap];0.95[CHB][hapmap];0.96[AMR][1000 genomes]
rs17111032	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111078	0.87[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs17111143	0.82[CHB][hapmap]
rs17111149	0.90[CHB][hapmap]
rs17111165	0.87[CHB][hapmap]
rs2371414	0.86[CHB][hapmap]
rs2371417	0.91[CHB][hapmap]
rs35114098	0.98[AMR][1000 genomes]
rs35731915	0.91[AMR][1000 genomes]
rs3861639	0.87[CHB][hapmap]
rs61979418	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67921287	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72690934	0.89[AMR][1000 genomes]
rs72690937	0.89[AMR][1000 genomes]
rs72690945	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81163200-81177800	Weak transcription	A549	lung
2	chr14:81166200-81180200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr14:81167600-81174200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:81167600-81181400	Weak transcription	Fetal Thymus	thymus
5	chr14:81168400-81184200	Weak transcription	Thymus	Thymus
6	chr14:81169000-81175600	Weak transcription	Dnd41	blood
7	chr14:81171000-81172400	Enhancers	NHEK	skin
8	chr14:81171000-81180600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr14:81171200-81172400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:81171200-81173000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:81171400-81172400	Enhancers	HMEC	breast
12	chr14:81171400-81172600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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