Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12587646	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12588311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12588325	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12588374	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12590477	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12885089	0.89[AMR][1000 genomes]
rs12892368	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12896053	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1470639	0.87[AMR][1000 genomes]
rs17111032	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17111034	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17111035	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17111078	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2840052	0.84[AMR][1000 genomes]
rs35114098	0.89[AMR][1000 genomes]
rs35731915	0.83[AMR][1000 genomes]
rs61979421	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61979422	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61979424	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs67921287	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72690934	0.84[AMR][1000 genomes]
rs72690937	0.84[AMR][1000 genomes]
rs72690945	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1035295	chr14:81180999-81236636	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81182000-81206400	Weak transcription	Fetal Thymus	thymus
2	chr14:81182800-81224600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:81185600-81208600	Weak transcription	Thymus	Thymus
4	chr14:81185800-81221200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:81192800-81221000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
7	chr14:81193000-81220800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:81193600-81209000	Weak transcription	HSMM	muscle
9	chr14:81195400-81223000	Weak transcription	Pancreas	Pancrea
10	chr14:81197400-81212800	Weak transcription	A549	lung
11	chr14:81198200-81220000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr14:81199000-81199800	Strong transcription	Dnd41	blood
13	chr14:81199000-81200400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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