Variant report

Variant	rs61979421
Chromosome Location	chr14:81208528-81208529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10498551	0.85[AMR][1000 genomes]
rs10498552	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12587646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12588311	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12590477	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12882027	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12892368	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17111032	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17111034	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17111035	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17111078	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17111093	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2371414	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2840052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34052204	0.80[AMR][1000 genomes]
rs35112141	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35749780	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35842427	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61979418	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61979422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67921287	0.81[ASN][1000 genomes]
rs68145550	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1035295	chr14:81180999-81236636	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81182800-81224600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr14:81185600-81208600	Weak transcription	Thymus	Thymus
3	chr14:81185800-81221200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:81192800-81221000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:81192800-81305400	Weak transcription	Primary B cells from cord blood	blood
6	chr14:81193000-81220800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:81193600-81209000	Weak transcription	HSMM	muscle
8	chr14:81195400-81223000	Weak transcription	Pancreas	Pancrea
9	chr14:81197400-81212800	Weak transcription	A549	lung
10	chr14:81198200-81220000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr14:81199800-81248600	Weak transcription	Primary T cells from cord blood	blood
12	chr14:81200400-81211000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:81203800-81229000	Weak transcription	Left Ventricle	heart
14	chr14:81204600-81217600	Strong transcription	Dnd41	blood
15	chr14:81205000-81261000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:81205200-81222800	Weak transcription	HMEC	breast
17	chr14:81205800-81208800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:81206400-81209600	Strong transcription	Fetal Thymus	thymus
19	chr14:81206400-81226800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr14:81207200-81232600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr14:81207600-81211000	Weak transcription	HUVEC	blood vessel
22	chr14:81207600-81226200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr14:81207600-81230800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr14:81207600-81265400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr14:81208000-81208600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:81208000-81215000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr14:81208400-81240400	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links