Variant report

Variant	rs17111035
Chromosome Location	chr14:81184895-81184896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10129919	0.82[CHB][hapmap]
rs10498551	0.81[CHB][hapmap]
rs10498552	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs11159475	0.82[CHB][hapmap];0.87[MEX][hapmap]
rs12587367	0.85[CHB][hapmap]
rs12587646	0.81[AMR][1000 genomes]
rs12588075	1.00[ASW][hapmap];0.91[CHB][hapmap];0.87[MEX][hapmap]
rs12588311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12588325	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12588374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12589266	0.90[CHB][hapmap]
rs12589935	0.82[CHB][hapmap];0.87[MEX][hapmap]
rs12590477	1.00[ASW][hapmap];0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs12590579	0.82[CHB][hapmap]
rs12880008	0.82[CHB][hapmap]
rs12882027	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs12885089	0.81[CEU][hapmap];0.95[CHB][hapmap];0.93[AMR][1000 genomes]
rs12885819	1.00[ASW][hapmap];0.87[MEX][hapmap]
rs12892149	0.82[CHB][hapmap]
rs12892368	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs12896053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1458992	0.82[CHB][hapmap];0.87[MEX][hapmap]
rs1470639	0.81[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.91[AMR][1000 genomes]
rs17111032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111034	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111078	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs17111143	0.82[CHB][hapmap];0.87[MEX][hapmap]
rs17111149	0.90[CHB][hapmap]
rs17111151	0.82[CHB][hapmap]
rs17111165	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs17111167	0.82[CHB][hapmap]
rs2167061	0.91[CHD][hapmap]
rs2371414	0.85[CHB][hapmap]
rs2371417	1.00[ASW][hapmap];0.91[CHB][hapmap];0.80[MEX][hapmap]
rs2840052	0.82[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs35114098	0.93[AMR][1000 genomes]
rs35731915	0.86[AMR][1000 genomes]
rs3861639	0.91[CHB][hapmap]
rs61979418	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61979421	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61979422	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61979424	0.81[AMR][1000 genomes]
rs67921287	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72690934	0.87[AMR][1000 genomes]
rs72690937	0.87[AMR][1000 genomes]
rs72690945	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1035295	chr14:81180999-81236636	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81172400-81185200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:81172600-81185200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:81179200-81186200	Enhancers	Dnd41	blood
4	chr14:81182000-81206400	Weak transcription	Fetal Thymus	thymus
5	chr14:81182800-81224600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:81184200-81185600	Strong transcription	Thymus	Thymus

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